MotifSOX6.H12INVIVO.0.P.B
Gene (human)SOX6
(GeneCards)
Gene synonyms (human)
Gene (mouse)Sox6
Gene synonyms (mouse)Sox-6
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length10
ConsensusbYWTTGTYbh
GC content38.97%
Information content (bits; total / per base)10.129 / 1.013
Data sourcesChIP-Seq
Aligned words993

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (11) 0.758 0.851 0.621 0.765 0.787 0.881 2.313 3.308 64.658 113.409
TF superclassOther all-alpha-helical DNA-binding domains {4} (TFClass)
TF classHigh-mobility group (HMG) domain factors {4.1} (TFClass)
TF familySOX-related {4.1.1} (TFClass)
TF subfamilyGroup D {4.1.1.4} (TFClass)
TFClass IDTFClass: 4.1.1.4.2
HGNCHGNC:16421
MGIMGI:98368
EntrezGene (human)GeneID:55553
(SSTAR profile)
EntrezGene (mouse)GeneID:20679
(SSTAR profile)
UniProt ID (human)SOX6_HUMAN
UniProt ID (mouse)SOX6_MOUSE
UniProt AC (human)P35712
(TFClass)
UniProt AC (mouse)P40645
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0145.0534.0181.0233.0
0257.0701.018.0217.0
03623.028.08.0334.0
042.017.036.0938.0
055.02.05.0981.0
064.033.0938.018.0
073.05.05.0980.0
0810.0307.0118.0558.0
09107.0447.0116.0323.0
10136.0254.0117.0486.0
PFM
ACGT
010.0450.5380.1820.235
020.0570.7060.0180.219
030.6270.0280.0080.336
040.0020.0170.0360.945
050.0050.0020.0050.988
060.0040.0330.9450.018
070.0030.0050.0050.987
080.010.3090.1190.562
090.1080.450.1170.325
100.1370.2560.1180.489
PWM
ACGT
01-1.6770.762-0.313-0.063
02-1.4481.034-2.539-0.134
030.916-2.129-3.2470.295
04-4.206-2.591-1.8911.324
05-3.616-4.206-3.6161.369
06-3.776-1.9741.324-2.539
07-3.968-3.616-3.6161.368
08-3.060.211-0.7360.806
09-0.8330.585-0.7530.262
10-0.5960.023-0.7450.668
Standard thresholds
P-value Threshold
0.001 4.689655
0.0005 5.685455
0.0001 7.54869