| Motif | SOX5.H12INVITRO.0.P.D |
| Gene (human) | SOX5 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sox5 |
| Gene synonyms (mouse) | Sox-5 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | SOX5.H12INVITRO.0.P.D |
| Gene (human) | SOX5 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sox5 |
| Gene synonyms (mouse) | Sox-5 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 9 |
| Consensus | SYATTGTYb |
| GC content | 39.15% |
| Information content (bits; total / per base) | 11.409 / 1.268 |
| Data sources | ChIP-Seq |
| Aligned words | 65 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (7) | 0.848 | 0.875 | 0.728 | 0.758 | 0.81 | 0.837 | 2.38 | 2.507 | 149.137 | 174.208 |
| Mouse | 1 (2) | 0.76 | 0.76 | 0.686 | 0.686 | 0.744 | 0.744 | 2.553 | 2.553 | 12.602 | 12.602 |
| TF superclass | Other all-alpha-helical DNA-binding domains {4} (TFClass) |
| TF class | High-mobility group (HMG) domain factors {4.1} (TFClass) |
| TF family | SOX-related {4.1.1} (TFClass) |
| TF subfamily | Group D {4.1.1.4} (TFClass) |
| TFClass ID | TFClass: 4.1.1.4.1 |
| HGNC | HGNC:11201 |
| MGI | MGI:98367 |
| EntrezGene (human) | GeneID:6660 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20678 (SSTAR profile) |
| UniProt ID (human) | SOX5_HUMAN |
| UniProt ID (mouse) | SOX5_MOUSE |
| UniProt AC (human) | P35711 (TFClass) |
| UniProt AC (mouse) | P35710 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | SOX5.H12INVITRO.0.P.D.pcm |
| PWM | SOX5.H12INVITRO.0.P.D.pwm |
| PFM | SOX5.H12INVITRO.0.P.D.pfm |
| Alignment | SOX5.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | SOX5.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | SOX5.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | SOX5.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | SOX5.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5.0 | 44.0 | 12.0 | 4.0 |
| 02 | 2.0 | 47.0 | 1.0 | 15.0 |
| 03 | 53.0 | 0.0 | 0.0 | 12.0 |
| 04 | 0.0 | 0.0 | 0.0 | 65.0 |
| 05 | 0.0 | 1.0 | 3.0 | 61.0 |
| 06 | 1.0 | 3.0 | 61.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 65.0 |
| 08 | 1.0 | 9.0 | 5.0 | 50.0 |
| 09 | 6.0 | 36.0 | 7.0 | 16.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.077 | 0.677 | 0.185 | 0.062 |
| 02 | 0.031 | 0.723 | 0.015 | 0.231 |
| 03 | 0.815 | 0.0 | 0.0 | 0.185 |
| 04 | 0.0 | 0.0 | 0.0 | 1.0 |
| 05 | 0.0 | 0.015 | 0.046 | 0.938 |
| 06 | 0.015 | 0.046 | 0.938 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.015 | 0.138 | 0.077 | 0.769 |
| 09 | 0.092 | 0.554 | 0.108 | 0.246 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.051 | 0.957 | -0.282 | -1.232 |
| 02 | -1.737 | 1.022 | -2.136 | -0.075 |
| 03 | 1.139 | -2.808 | -2.808 | -0.282 |
| 04 | -2.808 | -2.808 | -2.808 | 1.34 |
| 05 | -2.808 | -2.136 | -1.453 | 1.278 |
| 06 | -2.136 | -1.453 | 1.278 | -2.808 |
| 07 | -2.808 | -2.808 | -2.808 | 1.34 |
| 08 | -2.136 | -0.543 | -1.051 | 1.082 |
| 09 | -0.898 | 0.762 | -0.765 | -0.015 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.71786 |
| 0.0005 | 5.57726 |
| 0.0001 | 7.32152 |