MotifSOX15.H12INVIVO.0.P.B
Gene (human)SOX15
(GeneCards)
Gene synonyms (human)SOX12, SOX20, SOX26, SOX27
Gene (mouse)Sox15
Gene synonyms (mouse)Sox-15
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length8
ConsensusbCWTTGTb
GC content39.87%
Information content (bits; total / per base)7.523 / 0.94
Data sourcesChIP-Seq
Aligned words411

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (2) 0.617 0.626 0.442 0.453 0.591 0.6 1.267 1.303 8.711 11.066
Mouse 1 (6) 0.809 0.847 0.669 0.73 0.776 0.809 1.982 2.153 71.971 77.409
TF superclassOther all-alpha-helical DNA-binding domains {4} (TFClass)
TF classHigh-mobility group (HMG) domain factors {4.1} (TFClass)
TF familySOX-related {4.1.1} (TFClass)
TF subfamilyGroup G {4.1.1.7} (TFClass)
TFClass IDTFClass: 4.1.1.7.1
HGNCHGNC:11196
MGIMGI:98363
EntrezGene (human)GeneID:6665
(SSTAR profile)
EntrezGene (mouse)GeneID:20670
(SSTAR profile)
UniProt ID (human)SOX15_HUMAN
UniProt ID (mouse)SOX15_MOUSE
UniProt AC (human)O60248
(TFClass)
UniProt AC (mouse)P43267
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0123.0179.085.0124.0
021.0306.016.088.0
03116.024.05.0266.0
0410.026.030.0345.0
054.05.06.0396.0
0614.057.0339.01.0
0728.09.012.0362.0
0839.079.0133.0160.0
PFM
ACGT
010.0560.4360.2070.302
020.0020.7450.0390.214
030.2820.0580.0120.647
040.0240.0630.0730.839
050.010.0120.0150.964
060.0340.1390.8250.002
070.0680.0220.0290.881
080.0950.1920.3240.389
PWM
ACGT
01-1.4480.549-0.1870.186
02-3.7291.082-1.784-0.153
030.12-1.408-2.7740.942
04-2.204-1.332-1.1971.201
05-2.941-2.774-2.6311.338
06-1.906-0.5781.184-3.729
07-1.262-2.295-2.0441.249
08-0.945-0.2590.2550.438
Standard thresholds
P-value Threshold
0.001 5.087265
0.0005 5.792755
0.0001 7.121445