| Motif | SOX15.H12INVITRO.0.P.D |
| Gene (human) | SOX15 (GeneCards) |
| Gene synonyms (human) | SOX12, SOX20, SOX26, SOX27 |
| Gene (mouse) | Sox15 |
| Gene synonyms (mouse) | Sox-15 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | SOX15.H12INVITRO.0.P.D |
| Gene (human) | SOX15 (GeneCards) |
| Gene synonyms (human) | SOX12, SOX20, SOX26, SOX27 |
| Gene (mouse) | Sox15 |
| Gene synonyms (mouse) | Sox-15 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 8 |
| Consensus | bCWTTGTb |
| GC content | 39.87% |
| Information content (bits; total / per base) | 7.523 / 0.94 |
| Data sources | ChIP-Seq |
| Aligned words | 411 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (2) | 0.617 | 0.626 | 0.442 | 0.453 | 0.591 | 0.6 | 1.267 | 1.303 | 8.711 | 11.066 |
| Mouse | 1 (6) | 0.809 | 0.847 | 0.669 | 0.73 | 0.776 | 0.809 | 1.982 | 2.153 | 71.971 | 77.409 |
| TF superclass | Other all-alpha-helical DNA-binding domains {4} (TFClass) |
| TF class | High-mobility group (HMG) domain factors {4.1} (TFClass) |
| TF family | SOX-related {4.1.1} (TFClass) |
| TF subfamily | Group G {4.1.1.7} (TFClass) |
| TFClass ID | TFClass: 4.1.1.7.1 |
| HGNC | HGNC:11196 |
| MGI | MGI:98363 |
| EntrezGene (human) | GeneID:6665 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20670 (SSTAR profile) |
| UniProt ID (human) | SOX15_HUMAN |
| UniProt ID (mouse) | SOX15_MOUSE |
| UniProt AC (human) | O60248 (TFClass) |
| UniProt AC (mouse) | P43267 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | SOX15.H12INVITRO.0.P.D.pcm |
| PWM | SOX15.H12INVITRO.0.P.D.pwm |
| PFM | SOX15.H12INVITRO.0.P.D.pfm |
| Alignment | SOX15.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | SOX15.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | SOX15.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | SOX15.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | SOX15.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 23.0 | 179.0 | 85.0 | 124.0 |
| 02 | 1.0 | 306.0 | 16.0 | 88.0 |
| 03 | 116.0 | 24.0 | 5.0 | 266.0 |
| 04 | 10.0 | 26.0 | 30.0 | 345.0 |
| 05 | 4.0 | 5.0 | 6.0 | 396.0 |
| 06 | 14.0 | 57.0 | 339.0 | 1.0 |
| 07 | 28.0 | 9.0 | 12.0 | 362.0 |
| 08 | 39.0 | 79.0 | 133.0 | 160.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.056 | 0.436 | 0.207 | 0.302 |
| 02 | 0.002 | 0.745 | 0.039 | 0.214 |
| 03 | 0.282 | 0.058 | 0.012 | 0.647 |
| 04 | 0.024 | 0.063 | 0.073 | 0.839 |
| 05 | 0.01 | 0.012 | 0.015 | 0.964 |
| 06 | 0.034 | 0.139 | 0.825 | 0.002 |
| 07 | 0.068 | 0.022 | 0.029 | 0.881 |
| 08 | 0.095 | 0.192 | 0.324 | 0.389 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.448 | 0.549 | -0.187 | 0.186 |
| 02 | -3.729 | 1.082 | -1.784 | -0.153 |
| 03 | 0.12 | -1.408 | -2.774 | 0.942 |
| 04 | -2.204 | -1.332 | -1.197 | 1.201 |
| 05 | -2.941 | -2.774 | -2.631 | 1.338 |
| 06 | -1.906 | -0.578 | 1.184 | -3.729 |
| 07 | -1.262 | -2.295 | -2.044 | 1.249 |
| 08 | -0.945 | -0.259 | 0.255 | 0.438 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.087265 |
| 0.0005 | 5.792755 |
| 0.0001 | 7.121445 |