| Motif | SOX13.H12INVITRO.0.P.D |
| Gene (human) | SOX13 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sox13 |
| Gene synonyms (mouse) | Sox-13 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | SOX13.H12INVITRO.0.P.D |
| Gene (human) | SOX13 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sox13 |
| Gene synonyms (mouse) | Sox-13 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | nYCWTTGTYhhn |
| GC content | 40.94% |
| Information content (bits; total / per base) | 10.677 / 0.89 |
| Data sources | ChIP-Seq |
| Aligned words | 1004 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (14) | 0.81 | 0.868 | 0.683 | 0.737 | 0.808 | 0.867 | 2.5 | 2.78 | 103.975 | 147.201 |
| TF superclass | Other all-alpha-helical DNA-binding domains {4} (TFClass) |
| TF class | High-mobility group (HMG) domain factors {4.1} (TFClass) |
| TF family | SOX-related {4.1.1} (TFClass) |
| TF subfamily | Group D {4.1.1.4} (TFClass) |
| TFClass ID | TFClass: 4.1.1.4.3 |
| HGNC | HGNC:11192 |
| MGI | MGI:98361 |
| EntrezGene (human) | GeneID:9580 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20668 (SSTAR profile) |
| UniProt ID (human) | SOX13_HUMAN |
| UniProt ID (mouse) | SOX13_MOUSE |
| UniProt AC (human) | Q9UN79 (TFClass) |
| UniProt AC (mouse) | Q04891 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | SOX13.H12INVITRO.0.P.D.pcm |
| PWM | SOX13.H12INVITRO.0.P.D.pwm |
| PFM | SOX13.H12INVITRO.0.P.D.pfm |
| Alignment | SOX13.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | SOX13.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | SOX13.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | SOX13.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | SOX13.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 123.0 | 284.0 | 282.0 | 315.0 |
| 02 | 33.0 | 560.0 | 170.0 | 241.0 |
| 03 | 23.0 | 761.0 | 10.0 | 210.0 |
| 04 | 464.0 | 8.0 | 1.0 | 531.0 |
| 05 | 1.0 | 15.0 | 13.0 | 975.0 |
| 06 | 3.0 | 1.0 | 5.0 | 995.0 |
| 07 | 3.0 | 12.0 | 986.0 | 3.0 |
| 08 | 35.0 | 17.0 | 34.0 | 918.0 |
| 09 | 20.0 | 242.0 | 107.0 | 635.0 |
| 10 | 91.0 | 439.0 | 81.0 | 393.0 |
| 11 | 184.0 | 246.0 | 120.0 | 454.0 |
| 12 | 179.0 | 358.0 | 180.0 | 287.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.123 | 0.283 | 0.281 | 0.314 |
| 02 | 0.033 | 0.558 | 0.169 | 0.24 |
| 03 | 0.023 | 0.758 | 0.01 | 0.209 |
| 04 | 0.462 | 0.008 | 0.001 | 0.529 |
| 05 | 0.001 | 0.015 | 0.013 | 0.971 |
| 06 | 0.003 | 0.001 | 0.005 | 0.991 |
| 07 | 0.003 | 0.012 | 0.982 | 0.003 |
| 08 | 0.035 | 0.017 | 0.034 | 0.914 |
| 09 | 0.02 | 0.241 | 0.107 | 0.632 |
| 10 | 0.091 | 0.437 | 0.081 | 0.391 |
| 11 | 0.183 | 0.245 | 0.12 | 0.452 |
| 12 | 0.178 | 0.357 | 0.179 | 0.286 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.706 | 0.123 | 0.116 | 0.226 |
| 02 | -1.985 | 0.799 | -0.386 | -0.04 |
| 03 | -2.324 | 1.105 | -3.07 | -0.177 |
| 04 | 0.611 | -3.257 | -4.529 | 0.746 |
| 05 | -4.529 | -2.715 | -2.843 | 1.352 |
| 06 | -3.979 | -4.529 | -3.626 | 1.372 |
| 07 | -3.979 | -2.913 | 1.363 | -3.979 |
| 08 | -1.929 | -2.602 | -1.956 | 1.292 |
| 09 | -2.454 | -0.036 | -0.843 | 0.924 |
| 10 | -1.003 | 0.556 | -1.117 | 0.446 |
| 11 | -0.308 | -0.02 | -0.731 | 0.59 |
| 12 | -0.335 | 0.353 | -0.33 | 0.133 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.507215 |
| 0.0005 | 5.508115 |
| 0.0001 | 7.579585 |