MotifSOX11.H12INVIVO.1.S.B
Gene (human)SOX11
(GeneCards)
Gene synonyms (human)
Gene (mouse)Sox11
Gene synonyms (mouse)Sox-11
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length13
ConsensusndbTGTTCGSddd
GC content53.83%
Information content (bits; total / per base)11.332 / 0.872
Data sourcesHT-SELEX
Aligned words1539

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.595 0.655 0.411 0.457 0.484 0.576 0.989 1.291 4.853 9.237
Mouse 2 (8) 0.593 0.613 0.408 0.421 0.564 0.578 1.148 1.195 46.96 61.284

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.626 0.61 0.57 0.564 0.54 0.54
best 0.64 0.623 0.576 0.571 0.544 0.545

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.557 0.14 0.202 0.16
TF superclassOther all-alpha-helical DNA-binding domains {4} (TFClass)
TF classHigh-mobility group (HMG) domain factors {4.1} (TFClass)
TF familySOX-related {4.1.1} (TFClass)
TF subfamilyGroup C {4.1.1.3} (TFClass)
TFClass IDTFClass: 4.1.1.3.2
HGNCHGNC:11191
MGIMGI:98359
EntrezGene (human)GeneID:6664
(SSTAR profile)
EntrezGene (mouse)GeneID:20666
(SSTAR profile)
UniProt ID (human)SOX11_HUMAN
UniProt ID (mouse)SOX11_MOUSE
UniProt AC (human)P35716
(TFClass)
UniProt AC (mouse)Q7M6Y2
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 2 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01346.75439.75410.75341.75
02622.75225.75340.75349.75
03148.0201.0660.0530.0
0443.064.084.01348.0
0520.07.01486.026.0
060.00.084.01455.0
073.00.082.01454.0
0848.01473.02.016.0
0931.052.01431.025.0
1062.0190.01133.0154.0
11202.0139.0456.0742.0
12292.5205.5759.5281.5
13347.0205.0638.0349.0
PFM
ACGT
010.2250.2860.2670.222
020.4050.1470.2210.227
030.0960.1310.4290.344
040.0280.0420.0550.876
050.0130.0050.9660.017
060.00.00.0550.945
070.0020.00.0530.945
080.0310.9570.0010.01
090.020.0340.930.016
100.040.1230.7360.1
110.1310.090.2960.482
120.190.1340.4940.183
130.2250.1330.4150.227
PWM
ACGT
01-0.1030.1330.065-0.118
020.48-0.53-0.121-0.095
03-0.948-0.6450.5380.319
04-2.154-1.77-1.5051.25
05-2.874-3.7791.348-2.631
06-5.35-5.35-1.5051.327
07-4.382-5.35-1.5291.326
08-2.0491.339-4.613-3.076
09-2.466-1.9711.31-2.668
10-1.801-0.7011.077-0.909
11-0.64-1.010.1690.654
12-0.273-0.6230.678-0.311
13-0.103-0.6250.504-0.097
Standard thresholds
P-value Threshold
0.001 4.33551
0.0005 5.33117
0.0001 7.30396