MotifSOX11.H12INVIVO.0.P.B
Gene (human)SOX11
(GeneCards)
Gene synonyms (human)
Gene (mouse)Sox11
Gene synonyms (mouse)Sox-11
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length12
ConsensusbYCTTTGTYYhb
GC content45.14%
Information content (bits; total / per base)13.436 / 1.12
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.695 0.86 0.575 0.777 0.762 0.886 2.592 3.713 21.237 42.222
Mouse 2 (8) 0.923 0.94 0.845 0.877 0.941 0.955 4.046 4.264 511.39 579.229

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.531 0.522 0.519 0.514 0.512 0.51
best 0.539 0.527 0.524 0.517 0.514 0.512

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.669 0.338 0.607 0.398
TF superclassOther all-alpha-helical DNA-binding domains {4} (TFClass)
TF classHigh-mobility group (HMG) domain factors {4.1} (TFClass)
TF familySOX-related {4.1.1} (TFClass)
TF subfamilyGroup C {4.1.1.3} (TFClass)
TFClass IDTFClass: 4.1.1.3.2
HGNCHGNC:11191
MGIMGI:98359
EntrezGene (human)GeneID:6664
(SSTAR profile)
EntrezGene (mouse)GeneID:20666
(SSTAR profile)
UniProt ID (human)SOX11_HUMAN
UniProt ID (mouse)SOX11_MOUSE
UniProt AC (human)P35716
(TFClass)
UniProt AC (mouse)Q7M6Y2
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 2 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
0138.0343.0264.0355.0
023.0535.0132.0330.0
031.0916.00.083.0
0492.00.00.0908.0
050.03.00.0997.0
060.00.02.0998.0
073.013.0982.02.0
080.02.00.0998.0
0912.0319.094.0575.0
1022.0681.064.0233.0
11130.0316.0121.0433.0
12135.0415.0215.0235.0
PFM
ACGT
010.0380.3430.2640.355
020.0030.5350.1320.33
030.0010.9160.00.083
040.0920.00.00.908
050.00.0030.00.997
060.00.00.0020.998
070.0030.0130.9820.002
080.00.0020.00.998
090.0120.3190.0940.575
100.0220.6810.0640.233
110.130.3160.1210.433
120.1350.4150.2150.235
PWM
ACGT
01-1.8460.3140.0540.349
02-3.9750.757-0.6330.276
03-4.5251.294-4.982-1.089
04-0.988-4.982-4.9821.285
05-4.982-3.975-4.9821.378
06-4.982-4.982-4.2131.379
07-3.975-2.8391.363-4.213
08-4.982-4.213-4.9821.379
09-2.9090.242-0.9670.829
10-2.3620.998-1.343-0.07
11-0.6480.233-0.7180.546
12-0.610.504-0.15-0.061
Standard thresholds
P-value Threshold
0.001 2.96811
0.0005 4.242125
0.0001 7.15615