| Motif | SOX1.H12INVIVO.1.S.D |
| Gene (human) | SOX1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sox1 |
| Gene synonyms (mouse) | Sox-1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | SOX1.H12INVIVO.1.S.D |
| Gene (human) | SOX1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Sox1 |
| Gene synonyms (mouse) | Sox-1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 9 |
| Consensus | nCATTCnhn |
| GC content | 40.19% |
| Information content (bits; total / per base) | 8.241 / 0.916 |
| Data sources | HT-SELEX |
| Aligned words | 2428 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.593 | 0.56 | 0.553 | 0.539 | 0.53 | 0.526 |
| best | 0.618 | 0.577 | 0.569 | 0.551 | 0.54 | 0.534 | |
| TF superclass | Other all-alpha-helical DNA-binding domains {4} (TFClass) |
| TF class | High-mobility group (HMG) domain factors {4.1} (TFClass) |
| TF family | SOX-related {4.1.1} (TFClass) |
| TF subfamily | Group B {4.1.1.2} (TFClass) |
| TFClass ID | TFClass: 4.1.1.2.1 |
| HGNC | HGNC:11189 |
| MGI | MGI:98357 |
| EntrezGene (human) | GeneID:6656 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20664 (SSTAR profile) |
| UniProt ID (human) | SOX1_HUMAN |
| UniProt ID (mouse) | SOX1_MOUSE |
| UniProt AC (human) | O00570 (TFClass) |
| UniProt AC (mouse) | P53783 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | SOX1.H12INVIVO.1.S.D.pcm |
| PWM | SOX1.H12INVIVO.1.S.D.pwm |
| PFM | SOX1.H12INVIVO.1.S.D.pfm |
| Alignment | SOX1.H12INVIVO.1.S.D.words.tsv |
| Threshold to P-value map | SOX1.H12INVIVO.1.S.D.thr |
| Motif in other formats | |
| JASPAR format | SOX1.H12INVIVO.1.S.D_jaspar_format.txt |
| MEME format | SOX1.H12INVIVO.1.S.D_meme_format.meme |
| Transfac format | SOX1.H12INVIVO.1.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 686.25 | 605.25 | 393.25 | 743.25 |
| 02 | 88.0 | 2087.0 | 20.0 | 233.0 |
| 03 | 2205.0 | 139.0 | 46.0 | 38.0 |
| 04 | 0.0 | 1.0 | 0.0 | 2427.0 |
| 05 | 0.0 | 0.0 | 0.0 | 2428.0 |
| 06 | 23.0 | 1874.0 | 524.0 | 7.0 |
| 07 | 876.0 | 582.0 | 423.0 | 547.0 |
| 08 | 296.5 | 839.5 | 234.5 | 1057.5 |
| 09 | 480.5 | 557.5 | 455.5 | 934.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.283 | 0.249 | 0.162 | 0.306 |
| 02 | 0.036 | 0.86 | 0.008 | 0.096 |
| 03 | 0.908 | 0.057 | 0.019 | 0.016 |
| 04 | 0.0 | 0.0 | 0.0 | 1.0 |
| 05 | 0.0 | 0.0 | 0.0 | 1.0 |
| 06 | 0.009 | 0.772 | 0.216 | 0.003 |
| 07 | 0.361 | 0.24 | 0.174 | 0.225 |
| 08 | 0.122 | 0.346 | 0.097 | 0.436 |
| 09 | 0.198 | 0.23 | 0.188 | 0.385 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.122 | -0.003 | -0.432 | 0.202 |
| 02 | -1.912 | 1.233 | -3.323 | -0.952 |
| 03 | 1.288 | -1.463 | -2.542 | -2.724 |
| 04 | -5.745 | -5.33 | -5.745 | 1.383 |
| 05 | -5.745 | -5.745 | -5.745 | 1.384 |
| 06 | -3.195 | 1.125 | -0.147 | -4.22 |
| 07 | 0.366 | -0.042 | -0.36 | -0.104 |
| 08 | -0.713 | 0.323 | -0.946 | 0.554 |
| 09 | -0.233 | -0.085 | -0.286 | 0.43 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.42538 |
| 0.0005 | 6.18879 |
| 0.0001 | 7.151405 |