MotifSOX1.H12INVIVO.1.S.D
Gene (human)SOX1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Sox1
Gene synonyms (mouse)Sox-1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length9
ConsensusnCATTCnhn
GC content40.19%
Information content (bits; total / per base)8.241 / 0.916
Data sourcesHT-SELEX
Aligned words2428

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.593 0.56 0.553 0.539 0.53 0.526
best 0.618 0.577 0.569 0.551 0.54 0.534
TF superclassOther all-alpha-helical DNA-binding domains {4} (TFClass)
TF classHigh-mobility group (HMG) domain factors {4.1} (TFClass)
TF familySOX-related {4.1.1} (TFClass)
TF subfamilyGroup B {4.1.1.2} (TFClass)
TFClass IDTFClass: 4.1.1.2.1
HGNCHGNC:11189
MGIMGI:98357
EntrezGene (human)GeneID:6656
(SSTAR profile)
EntrezGene (mouse)GeneID:20664
(SSTAR profile)
UniProt ID (human)SOX1_HUMAN
UniProt ID (mouse)SOX1_MOUSE
UniProt AC (human)O00570
(TFClass)
UniProt AC (mouse)P53783
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01686.25605.25393.25743.25
0288.02087.020.0233.0
032205.0139.046.038.0
040.01.00.02427.0
050.00.00.02428.0
0623.01874.0524.07.0
07876.0582.0423.0547.0
08296.5839.5234.51057.5
09480.5557.5455.5934.5
PFM
ACGT
010.2830.2490.1620.306
020.0360.860.0080.096
030.9080.0570.0190.016
040.00.00.01.0
050.00.00.01.0
060.0090.7720.2160.003
070.3610.240.1740.225
080.1220.3460.0970.436
090.1980.230.1880.385
PWM
ACGT
010.122-0.003-0.4320.202
02-1.9121.233-3.323-0.952
031.288-1.463-2.542-2.724
04-5.745-5.33-5.7451.383
05-5.745-5.745-5.7451.384
06-3.1951.125-0.147-4.22
070.366-0.042-0.36-0.104
08-0.7130.323-0.9460.554
09-0.233-0.085-0.2860.43
Standard thresholds
P-value Threshold
0.001 5.42538
0.0005 6.18879
0.0001 7.151405