| Motif | SOLH2.H12INVIVO.0.S.D |
| Gene (human) | SOHLH2 (GeneCards) |
| Gene synonyms (human) | TEB1 |
| Gene (mouse) | Sohlh2 |
| Gene synonyms (mouse) | Tohlh2 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | SOLH2.H12INVIVO.0.S.D |
| Gene (human) | SOHLH2 (GeneCards) |
| Gene synonyms (human) | TEB1 |
| Gene (mouse) | Sohlh2 |
| Gene synonyms (mouse) | Tohlh2 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | nCWCGTGCnnn |
| GC content | 61.48% |
| Information content (bits; total / per base) | 11.261 / 1.024 |
| Data sources | HT-SELEX |
| Aligned words | 9210 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.964 | 0.947 | 0.903 | 0.878 | 0.81 | 0.791 |
| best | 0.964 | 0.947 | 0.903 | 0.878 | 0.81 | 0.791 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | PAS {1.2.5} (TFClass) |
| TF subfamily | SOHLH {1.2.5.5} (TFClass) |
| TFClass ID | TFClass: 1.2.5.5.2 |
| HGNC | HGNC:26026 |
| MGI | MGI:1921684 |
| EntrezGene (human) | GeneID:100526761 (SSTAR profile) GeneID:54937 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:74434 (SSTAR profile) |
| UniProt ID (human) | SOLH2_HUMAN |
| UniProt ID (mouse) | SOLH2_MOUSE |
| UniProt AC (human) | Q9NX45 (TFClass) |
| UniProt AC (mouse) | Q9D489 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | SOLH2.H12INVIVO.0.S.D.pcm |
| PWM | SOLH2.H12INVIVO.0.S.D.pwm |
| PFM | SOLH2.H12INVIVO.0.S.D.pfm |
| Alignment | SOLH2.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | SOLH2.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | SOLH2.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | SOLH2.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | SOLH2.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1724.25 | 2551.25 | 2766.25 | 2168.25 |
| 02 | 762.5 | 7575.5 | 166.5 | 705.5 |
| 03 | 6996.0 | 714.0 | 642.0 | 858.0 |
| 04 | 1.0 | 9207.0 | 2.0 | 0.0 |
| 05 | 0.0 | 0.0 | 9210.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 9210.0 |
| 07 | 0.0 | 2.0 | 9206.0 | 2.0 |
| 08 | 962.0 | 7816.0 | 399.0 | 33.0 |
| 09 | 2813.0 | 1385.0 | 2219.0 | 2793.0 |
| 10 | 2270.5 | 2363.5 | 1401.5 | 3174.5 |
| 11 | 2053.5 | 2344.5 | 2317.5 | 2494.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.187 | 0.277 | 0.3 | 0.235 |
| 02 | 0.083 | 0.823 | 0.018 | 0.077 |
| 03 | 0.76 | 0.078 | 0.07 | 0.093 |
| 04 | 0.0 | 1.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 1.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.0 | 0.0 | 1.0 | 0.0 |
| 08 | 0.104 | 0.849 | 0.043 | 0.004 |
| 09 | 0.305 | 0.15 | 0.241 | 0.303 |
| 10 | 0.247 | 0.257 | 0.152 | 0.345 |
| 11 | 0.223 | 0.255 | 0.252 | 0.271 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.289 | 0.102 | 0.183 | -0.06 |
| 02 | -1.103 | 1.19 | -2.614 | -1.181 |
| 03 | 1.111 | -1.169 | -1.275 | -0.985 |
| 04 | -6.554 | 1.385 | -6.288 | -6.918 |
| 05 | -6.918 | -6.918 | 1.386 | -6.918 |
| 06 | -6.918 | -6.918 | -6.918 | 1.386 |
| 07 | -6.918 | -6.288 | 1.385 | -6.288 |
| 08 | -0.871 | 1.221 | -1.748 | -4.179 |
| 09 | 0.2 | -0.508 | -0.037 | 0.193 |
| 10 | -0.014 | 0.026 | -0.496 | 0.321 |
| 11 | -0.114 | 0.018 | 0.006 | 0.08 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.331015 |
| 0.0005 | 5.44917 |
| 0.0001 | 7.283875 |