| Motif | SNAI3.H12RSNP.0.S.C |
| Gene (human) | SNAI3 (GeneCards) |
| Gene synonyms (human) | ZNF293 |
| Gene (mouse) | Snai3 |
| Gene synonyms (mouse) | Smuc, Zfp293 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | C |
| Motif | SNAI3.H12RSNP.0.S.C |
| Gene (human) | SNAI3 (GeneCards) |
| Gene synonyms (human) | ZNF293 |
| Gene (mouse) | Snai3 |
| Gene synonyms (mouse) | Smuc, Zfp293 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | C |
| Motif length | 13 |
| Consensus | ndRACAGGTGbdn |
| GC content | 52.12% |
| Information content (bits; total / per base) | 15.045 / 1.157 |
| Data sources | HT-SELEX |
| Aligned words | 622 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.884 | 0.87 | 0.708 | 0.717 | 0.611 | 0.631 |
| best | 0.884 | 0.87 | 0.708 | 0.717 | 0.611 | 0.631 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.903 | 0.669 | 0.886 | 0.61 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Snail-like {2.3.3.2} (TFClass) |
| TFClass ID | TFClass: 2.3.3.2.3 |
| HGNC | HGNC:18411 |
| MGI | MGI:1353563 |
| EntrezGene (human) | GeneID:333929 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:30927 (SSTAR profile) |
| UniProt ID (human) | SNAI3_HUMAN |
| UniProt ID (mouse) | SNAI3_MOUSE |
| UniProt AC (human) | Q3KNW1 (TFClass) |
| UniProt AC (mouse) | Q9QY31 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | SNAI3.H12RSNP.0.S.C.pcm |
| PWM | SNAI3.H12RSNP.0.S.C.pwm |
| PFM | SNAI3.H12RSNP.0.S.C.pfm |
| Alignment | SNAI3.H12RSNP.0.S.C.words.tsv |
| Threshold to P-value map | SNAI3.H12RSNP.0.S.C.thr |
| Motif in other formats | |
| JASPAR format | SNAI3.H12RSNP.0.S.C_jaspar_format.txt |
| MEME format | SNAI3.H12RSNP.0.S.C_meme_format.meme |
| Transfac format | SNAI3.H12RSNP.0.S.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 136.0 | 104.0 | 246.0 | 136.0 |
| 02 | 107.5 | 94.5 | 186.5 | 233.5 |
| 03 | 461.0 | 1.0 | 85.0 | 75.0 |
| 04 | 505.0 | 0.0 | 117.0 | 0.0 |
| 05 | 0.0 | 622.0 | 0.0 | 0.0 |
| 06 | 622.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 622.0 | 0.0 |
| 08 | 0.0 | 0.0 | 622.0 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 622.0 |
| 10 | 0.0 | 0.0 | 622.0 | 0.0 |
| 11 | 9.0 | 257.0 | 164.0 | 192.0 |
| 12 | 328.75 | 57.75 | 134.75 | 100.75 |
| 13 | 193.0 | 146.0 | 133.0 | 150.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.219 | 0.167 | 0.395 | 0.219 |
| 02 | 0.173 | 0.152 | 0.3 | 0.375 |
| 03 | 0.741 | 0.002 | 0.137 | 0.121 |
| 04 | 0.812 | 0.0 | 0.188 | 0.0 |
| 05 | 0.0 | 1.0 | 0.0 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 1.0 | 0.0 |
| 08 | 0.0 | 0.0 | 1.0 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 1.0 |
| 10 | 0.0 | 0.0 | 1.0 | 0.0 |
| 11 | 0.014 | 0.413 | 0.264 | 0.309 |
| 12 | 0.529 | 0.093 | 0.217 | 0.162 |
| 13 | 0.31 | 0.235 | 0.214 | 0.241 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.133 | -0.397 | 0.455 | -0.133 |
| 02 | -0.365 | -0.491 | 0.18 | 0.403 |
| 03 | 1.08 | -4.098 | -0.596 | -0.718 |
| 04 | 1.171 | -4.582 | -0.281 | -4.582 |
| 05 | -4.582 | 1.379 | -4.582 | -4.582 |
| 06 | 1.379 | -4.582 | -4.582 | -4.582 |
| 07 | -4.582 | -4.582 | 1.379 | -4.582 |
| 08 | -4.582 | -4.582 | 1.379 | -4.582 |
| 09 | -4.582 | -4.582 | -4.582 | 1.379 |
| 10 | -4.582 | -4.582 | 1.379 | -4.582 |
| 11 | -2.695 | 0.498 | 0.053 | 0.209 |
| 12 | 0.743 | -0.973 | -0.142 | -0.428 |
| 13 | 0.214 | -0.062 | -0.155 | -0.036 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.03335 |
| 0.0005 | 3.381415 |
| 0.0001 | 5.73687 |