| Motif | SNAI3.H12INVIVO.0.S.D |
| Gene (human) | SNAI3 (GeneCards) |
| Gene synonyms (human) | ZNF293 |
| Gene (mouse) | Snai3 |
| Gene synonyms (mouse) | Smuc, Zfp293 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | SNAI3.H12INVIVO.0.S.D |
| Gene (human) | SNAI3 (GeneCards) |
| Gene synonyms (human) | ZNF293 |
| Gene (mouse) | Snai3 |
| Gene synonyms (mouse) | Smuc, Zfp293 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | ndRCAGGTGbd |
| GC content | 57.66% |
| Information content (bits; total / per base) | 13.32 / 1.211 |
| Data sources | HT-SELEX |
| Aligned words | 4989 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.888 | 0.876 | 0.717 | 0.724 | 0.613 | 0.635 |
| best | 0.888 | 0.876 | 0.717 | 0.724 | 0.613 | 0.635 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.867 | 0.631 | 0.859 | 0.572 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Snail-like {2.3.3.2} (TFClass) |
| TFClass ID | TFClass: 2.3.3.2.3 |
| HGNC | HGNC:18411 |
| MGI | MGI:1353563 |
| EntrezGene (human) | GeneID:333929 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:30927 (SSTAR profile) |
| UniProt ID (human) | SNAI3_HUMAN |
| UniProt ID (mouse) | SNAI3_MOUSE |
| UniProt AC (human) | Q3KNW1 (TFClass) |
| UniProt AC (mouse) | Q9QY31 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | SNAI3.H12INVIVO.0.S.D.pcm |
| PWM | SNAI3.H12INVIVO.0.S.D.pwm |
| PFM | SNAI3.H12INVIVO.0.S.D.pfm |
| Alignment | SNAI3.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | SNAI3.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | SNAI3.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | SNAI3.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | SNAI3.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 972.25 | 1063.25 | 1536.25 | 1417.25 |
| 02 | 2294.5 | 537.5 | 1355.5 | 801.5 |
| 03 | 2914.0 | 0.0 | 2021.0 | 54.0 |
| 04 | 28.0 | 4921.0 | 40.0 | 0.0 |
| 05 | 4989.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 4989.0 | 0.0 |
| 07 | 0.0 | 0.0 | 4989.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 4989.0 |
| 09 | 12.0 | 0.0 | 4977.0 | 0.0 |
| 10 | 380.75 | 1882.75 | 1363.75 | 1361.75 |
| 11 | 2107.0 | 738.0 | 1231.0 | 913.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.195 | 0.213 | 0.308 | 0.284 |
| 02 | 0.46 | 0.108 | 0.272 | 0.161 |
| 03 | 0.584 | 0.0 | 0.405 | 0.011 |
| 04 | 0.006 | 0.986 | 0.008 | 0.0 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 1.0 | 0.0 |
| 07 | 0.0 | 0.0 | 1.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 1.0 |
| 09 | 0.002 | 0.0 | 0.998 | 0.0 |
| 10 | 0.076 | 0.377 | 0.273 | 0.273 |
| 11 | 0.422 | 0.148 | 0.247 | 0.183 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.249 | -0.159 | 0.208 | 0.128 |
| 02 | 0.609 | -0.84 | 0.083 | -0.441 |
| 03 | 0.848 | -6.375 | 0.482 | -3.103 |
| 04 | -3.725 | 1.371 | -3.39 | -6.375 |
| 05 | 1.385 | -6.375 | -6.375 | -6.375 |
| 06 | -6.375 | -6.375 | 1.385 | -6.375 |
| 07 | -6.375 | -6.375 | 1.385 | -6.375 |
| 08 | -6.375 | -6.375 | -6.375 | 1.385 |
| 09 | -4.482 | -6.375 | 1.383 | -6.375 |
| 10 | -1.183 | 0.411 | 0.089 | 0.088 |
| 11 | 0.524 | -0.524 | -0.013 | -0.311 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.511635 |
| 0.0005 | 2.622695 |
| 0.0001 | 7.71835 |