MotifSNAI3.H12CORE.0.S.C
Gene (human)SNAI3
(GeneCards)
Gene synonyms (human)ZNF293
Gene (mouse)Snai3
Gene synonyms (mouse)Smuc, Zfp293
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length11
ConsensusndRCAGGTGbd
GC content57.66%
Information content (bits; total / per base)13.32 / 1.211
Data sourcesHT-SELEX
Aligned words4989

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.888 0.876 0.717 0.724 0.613 0.635
best 0.888 0.876 0.717 0.724 0.613 0.635

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.867 0.631 0.859 0.572
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilySnail-like {2.3.3.2} (TFClass)
TFClass IDTFClass: 2.3.3.2.3
HGNCHGNC:18411
MGIMGI:1353563
EntrezGene (human)GeneID:333929
(SSTAR profile)
EntrezGene (mouse)GeneID:30927
(SSTAR profile)
UniProt ID (human)SNAI3_HUMAN
UniProt ID (mouse)SNAI3_MOUSE
UniProt AC (human)Q3KNW1
(TFClass)
UniProt AC (mouse)Q9QY31
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
01972.251063.251536.251417.25
022294.5537.51355.5801.5
032914.00.02021.054.0
0428.04921.040.00.0
054989.00.00.00.0
060.00.04989.00.0
070.00.04989.00.0
080.00.00.04989.0
0912.00.04977.00.0
10380.751882.751363.751361.75
112107.0738.01231.0913.0
PFM
ACGT
010.1950.2130.3080.284
020.460.1080.2720.161
030.5840.00.4050.011
040.0060.9860.0080.0
051.00.00.00.0
060.00.01.00.0
070.00.01.00.0
080.00.00.01.0
090.0020.00.9980.0
100.0760.3770.2730.273
110.4220.1480.2470.183
PWM
ACGT
01-0.249-0.1590.2080.128
020.609-0.840.083-0.441
030.848-6.3750.482-3.103
04-3.7251.371-3.39-6.375
051.385-6.375-6.375-6.375
06-6.375-6.3751.385-6.375
07-6.375-6.3751.385-6.375
08-6.375-6.375-6.3751.385
09-4.482-6.3751.383-6.375
10-1.1830.4110.0890.088
110.524-0.524-0.013-0.311
Standard thresholds
P-value Threshold
0.001 1.511635
0.0005 2.622695
0.0001 7.71835