MotifSKOR2.H12INVITRO.0.SM.B
Gene (human)SKOR2
(GeneCards)
Gene synonyms (human)CORL2, FUSSEL18
Gene (mouse)Skor2
Gene synonyms (mouse)Corl2
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length15
ConsensusndnSdTTAATTAAnn
GC content28.11%
Information content (bits; total / per base)16.126 / 1.075
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words7328

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.992 0.988 0.947 0.942 0.859 0.859
best 0.998 0.996 0.994 0.991 0.955 0.949
Methyl HT-SELEX, 1 experiments median 0.986 0.98 0.9 0.892 0.764 0.77
best 0.986 0.98 0.9 0.892 0.764 0.77
Non-Methyl HT-SELEX, 1 experiments median 0.998 0.996 0.994 0.991 0.955 0.949
best 0.998 0.996 0.994 0.991 0.955 0.949

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.97 0.833 0.93 0.615
TF superclassYet undefined DNA-binding domains {0} (TFClass)
TF classUncharacterized {0.0} (TFClass)
TF familyUnannotated {0.0.9} (TFClass)
TF subfamily {0.0.9.0} (TFClass)
TFClass IDTFClass: 0.0.9.0.4
HGNCHGNC:32695
MGIMGI:3645984
EntrezGene (human)GeneID:652991
(SSTAR profile)
EntrezGene (mouse)GeneID:664805
(SSTAR profile)
UniProt ID (human)SKOR2_HUMAN
UniProt ID (mouse)SKOR2_MOUSE
UniProt AC (human)Q2VWA4
(TFClass)
UniProt AC (mouse)A7M7C7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011508.751720.751931.752166.75
023872.0938.0951.01567.0
032115.01493.02409.01311.0
04857.04700.01205.0566.0
051362.0423.02796.02747.0
060.00.03417.03911.0
070.00.00.07328.0
087328.00.00.00.0
097328.00.00.00.0
100.00.00.07328.0
110.00.00.07328.0
127328.00.00.00.0
137239.067.00.022.0
141195.752618.752131.751381.75
152214.751772.752318.751021.75
PFM
ACGT
010.2060.2350.2640.296
020.5280.1280.130.214
030.2890.2040.3290.179
040.1170.6410.1640.077
050.1860.0580.3820.375
060.00.00.4660.534
070.00.00.01.0
081.00.00.00.0
091.00.00.00.0
100.00.00.01.0
110.00.00.01.0
121.00.00.00.0
130.9880.0090.00.003
140.1630.3570.2910.189
150.3020.2420.3160.139
PWM
ACGT
01-0.194-0.0630.0530.168
020.748-0.668-0.655-0.156
030.143-0.2040.274-0.334
04-0.7580.941-0.418-1.172
05-0.296-1.4620.4220.405
06-6.715-6.7150.6230.758
07-6.715-6.715-6.7151.385
081.385-6.715-6.715-6.715
091.385-6.715-6.715-6.715
10-6.715-6.715-6.7151.385
11-6.715-6.715-6.7151.385
121.385-6.715-6.715-6.715
131.373-3.277-6.715-4.327
14-0.4260.3570.151-0.282
150.19-0.0330.235-0.583
Standard thresholds
P-value Threshold
0.001 -2.76899
0.0005 0.79301
0.0001 3.71371