SKOR1.H12INVIVO.1.S.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	SKOR1.H12INVIVO.1.S.D
Gene (human)	SKOR1 (GeneCards)
Gene synonyms (human)	CORL1, FUSSEL15, LBXCOR1
Gene (mouse)	Skor1
Gene synonyms (mouse)	Corl1, Lbxcor1
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	16
Consensus	nhnhvTTAATTAMvbn
GC content	31.08%
Information content (bits; total / per base)	15.141 / 0.946
Data sources	HT-SELEX
Aligned words	2498

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.991	0.988	0.93	0.93	0.836	0.855
Overall, 2 experiments	best	0.999	0.998	0.998	0.997	0.992	0.99
Methyl HT-SELEX, 1 experiments	median	0.999	0.998	0.998	0.997	0.992	0.99
Methyl HT-SELEX, 1 experiments	best	0.999	0.998	0.998	0.997	0.992	0.99
Non-Methyl HT-SELEX, 1 experiments	median	0.984	0.977	0.863	0.862	0.681	0.719
Non-Methyl HT-SELEX, 1 experiments	best	0.984	0.977	0.863	0.862	0.681	0.719

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	Uncharacterized {0.0} (TFClass)
TF family	Unannotated {0.0.9} (TFClass)
TF subfamily	{0.0.9.0} (TFClass)
TFClass ID	TFClass: 0.0.9.0.5
HGNC	HGNC:21326
MGI	MGI:2443473
EntrezGene (human)	GeneID:390598 (SSTAR profile)
EntrezGene (mouse)	GeneID:207667 (SSTAR profile)
UniProt ID (human)	SKOR1_HUMAN
UniProt ID (mouse)	SKOR1_MOUSE
UniProt AC (human)	P84550 (TFClass)
UniProt AC (mouse)	Q8BX46 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	SKOR1.H12INVIVO.1.S.D.pcm
PWM	SKOR1.H12INVIVO.1.S.D.pwm
PFM	SKOR1.H12INVIVO.1.S.D.pfm
Alignment	SKOR1.H12INVIVO.1.S.D.words.tsv
Threshold to P-value map	SKOR1.H12INVIVO.1.S.D.thr
Motif in other formats
JASPAR format	SKOR1.H12INVIVO.1.S.D_jaspar_format.txt
MEME format	SKOR1.H12INVIVO.1.S.D_meme_format.meme
Transfac format	SKOR1.H12INVIVO.1.S.D_transfac_format.txt
Homer format	SKOR1.H12INVIVO.1.S.D_homer_format_0.001.txt SKOR1.H12INVIVO.1.S.D_homer_format_0.0005.txt SKOR1.H12INVIVO.1.S.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	625.0	584.0	509.0	780.0
02	1103.0	478.0	392.0	525.0
03	714.0	548.0	832.0	404.0
04	269.0	1471.0	267.0	491.0
05	657.0	373.0	1225.0	243.0
06	10.0	4.0	248.0	2236.0
07	0.0	4.0	3.0	2491.0
08	2490.0	8.0	0.0	0.0
09	2494.0	2.0	2.0	0.0
10	4.0	2.0	3.0	2489.0
11	0.0	8.0	1.0	2489.0
12	2483.0	3.0	7.0	5.0
13	1056.0	1344.0	27.0	71.0
14	841.0	919.0	423.0	315.0
15	268.25	637.25	901.25	691.25
16	527.5	638.5	557.5	774.5

PFM

	A	C	G	T
01	0.25	0.234	0.204	0.312
02	0.442	0.191	0.157	0.21
03	0.286	0.219	0.333	0.162
04	0.108	0.589	0.107	0.197
05	0.263	0.149	0.49	0.097
06	0.004	0.002	0.099	0.895
07	0.0	0.002	0.001	0.997
08	0.997	0.003	0.0	0.0
09	0.998	0.001	0.001	0.0
10	0.002	0.001	0.001	0.996
11	0.0	0.003	0.0	0.996
12	0.994	0.001	0.003	0.002
13	0.423	0.538	0.011	0.028
14	0.337	0.368	0.169	0.126
15	0.107	0.255	0.361	0.277
16	0.211	0.256	0.223	0.31

PWM

	A	C	G	T
01	0.001	-0.067	-0.204	0.222
02	0.567	-0.266	-0.464	-0.173
03	0.134	-0.13	0.286	-0.434
04	-0.838	0.855	-0.846	-0.24
05	0.051	-0.513	0.672	-0.939
06	-3.959	-4.656	-0.919	1.273
07	-5.769	-4.656	-4.84	1.381
08	1.381	-4.142	-5.769	-5.769
09	1.382	-5.065	-5.065	-5.769
10	-4.656	-5.065	-4.84	1.38
11	-5.769	-4.142	-5.356	1.38
12	1.378	-4.84	-4.248	-4.501
13	0.524	0.765	-3.074	-2.15
14	0.297	0.385	-0.388	-0.681
15	-0.841	0.02	0.366	0.101
16	-0.168	0.022	-0.113	0.215

Standard thresholds

P-value	Threshold
0.001	1.25771
0.0005	2.90396
0.0001	5.70036