SKOR1.H12INVIVO.0.M.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	SKOR1.H12INVIVO.0.M.D
Gene (human)	SKOR1 (GeneCards)
Gene synonyms (human)	CORL1, FUSSEL15, LBXCOR1
Gene (mouse)	Skor1
Gene synonyms (mouse)	Corl1, Lbxcor1
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	nnhnWnMdTTAATTAAhn
GC content	31.02%
Information content (bits; total / per base)	16.41 / 0.912
Data sources	Methyl-HT-SELEX
Aligned words	9219

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.992	0.989	0.93	0.93	0.835	0.855
Overall, 2 experiments	best	0.999	0.999	0.999	0.998	0.994	0.992
Methyl HT-SELEX, 1 experiments	median	0.999	0.999	0.999	0.998	0.994	0.992
Methyl HT-SELEX, 1 experiments	best	0.999	0.999	0.999	0.998	0.994	0.992
Non-Methyl HT-SELEX, 1 experiments	median	0.985	0.978	0.861	0.862	0.676	0.717
Non-Methyl HT-SELEX, 1 experiments	best	0.985	0.978	0.861	0.862	0.676	0.717

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	Uncharacterized {0.0} (TFClass)
TF family	Unannotated {0.0.9} (TFClass)
TF subfamily	{0.0.9.0} (TFClass)
TFClass ID	TFClass: 0.0.9.0.5
HGNC	HGNC:21326
MGI	MGI:2443473
EntrezGene (human)	GeneID:390598 (SSTAR profile)
EntrezGene (mouse)	GeneID:207667 (SSTAR profile)
UniProt ID (human)	SKOR1_HUMAN
UniProt ID (mouse)	SKOR1_MOUSE
UniProt AC (human)	P84550 (TFClass)
UniProt AC (mouse)	Q8BX46 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	SKOR1.H12INVIVO.0.M.D.pcm
PWM	SKOR1.H12INVIVO.0.M.D.pwm
PFM	SKOR1.H12INVIVO.0.M.D.pfm
Alignment	SKOR1.H12INVIVO.0.M.D.words.tsv
Threshold to P-value map	SKOR1.H12INVIVO.0.M.D.thr
Motif in other formats
JASPAR format	SKOR1.H12INVIVO.0.M.D_jaspar_format.txt
MEME format	SKOR1.H12INVIVO.0.M.D_meme_format.meme
Transfac format	SKOR1.H12INVIVO.0.M.D_transfac_format.txt
Homer format	SKOR1.H12INVIVO.0.M.D_homer_format_0.001.txt SKOR1.H12INVIVO.0.M.D_homer_format_0.0005.txt SKOR1.H12INVIVO.0.M.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1763.5	2389.5	2534.5	2531.5
02	1401.5	3259.5	2777.5	1780.5
03	1588.0	1318.0	1304.0	5009.0
04	1458.0	2655.0	2342.0	2764.0
05	6877.0	643.0	509.0	1190.0
06	3466.0	1669.0	2338.0	1746.0
07	1203.0	5759.0	1192.0	1065.0
08	1351.0	392.0	3625.0	3851.0
09	0.0	0.0	4201.0	5018.0
10	0.0	0.0	0.0	9219.0
11	9219.0	0.0	0.0	0.0
12	9219.0	0.0	0.0	0.0
13	0.0	0.0	0.0	9219.0
14	0.0	0.0	0.0	9219.0
15	9219.0	0.0	0.0	0.0
16	5686.0	3518.0	3.0	12.0
17	3904.5	3204.5	814.5	1295.5
18	2278.75	1597.75	3426.75	1915.75

PFM

	A	C	G	T
01	0.191	0.259	0.275	0.275
02	0.152	0.354	0.301	0.193
03	0.172	0.143	0.141	0.543
04	0.158	0.288	0.254	0.3
05	0.746	0.07	0.055	0.129
06	0.376	0.181	0.254	0.189
07	0.13	0.625	0.129	0.116
08	0.147	0.043	0.393	0.418
09	0.0	0.0	0.456	0.544
10	0.0	0.0	0.0	1.0
11	1.0	0.0	0.0	0.0
12	1.0	0.0	0.0	0.0
13	0.0	0.0	0.0	1.0
14	0.0	0.0	0.0	1.0
15	1.0	0.0	0.0	0.0
16	0.617	0.382	0.0	0.001
17	0.424	0.348	0.088	0.141
18	0.247	0.173	0.372	0.208

PWM

	A	C	G	T
01	-0.267	0.036	0.095	0.094
02	-0.497	0.346	0.186	-0.258
03	-0.372	-0.558	-0.569	0.776
04	-0.457	0.141	0.016	0.182
05	1.093	-1.274	-1.507	-0.66
06	0.408	-0.322	0.014	-0.277
07	-0.649	0.915	-0.658	-0.771
08	-0.533	-1.767	0.453	0.513
09	-6.919	-6.919	0.6	0.778
10	-6.919	-6.919	-6.919	1.386
11	1.386	-6.919	-6.919	-6.919
12	1.386	-6.919	-6.919	-6.919
13	-6.919	-6.919	-6.919	1.386
14	-6.919	-6.919	-6.919	1.386
15	1.386	-6.919	-6.919	-6.919
16	0.902	0.423	-6.079	-5.085
17	0.527	0.329	-1.038	-0.575
18	-0.011	-0.366	0.396	-0.185

Standard thresholds

P-value	Threshold
0.001	-1.68134
0.0005	0.37606
0.0001	3.47186