Motif | SIX4.H12CORE.1.M.C |
Gene (human) | SIX4 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Six4 |
Gene synonyms (mouse) | Arec3 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | C |
Motif | SIX4.H12CORE.1.M.C |
Gene (human) | SIX4 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Six4 |
Gene synonyms (mouse) | Arec3 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | C |
Motif length | 15 |
Consensus | nvbSATACSYnhhvn |
GC content | 51.67% |
Information content (bits; total / per base) | 9.373 / 0.625 |
Data sources | Methyl-HT-SELEX |
Aligned words | 574 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 1 (6) | 0.693 | 0.705 | 0.514 | 0.558 | 0.677 | 0.68 | 1.664 | 1.742 | 25.602 | 44.745 |
Mouse | 1 (7) | 0.525 | 0.534 | 0.358 | 0.366 | 0.528 | 0.539 | 1.078 | 1.112 | 4.585 | 5.319 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Methyl HT-SELEX, 1 experiments | median | 0.724 | 0.662 | 0.679 | 0.628 | 0.636 | 0.6 |
best | 0.724 | 0.662 | 0.679 | 0.628 | 0.636 | 0.6 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HD-SINE {3.1.6} (TFClass) |
TF subfamily | SIX4-like {3.1.6.3} (TFClass) |
TFClass ID | TFClass: 3.1.6.3.1 |
HGNC | HGNC:10890 |
MGI | MGI:106034 |
EntrezGene (human) | GeneID:51804 (SSTAR profile) |
EntrezGene (mouse) | GeneID:20474 (SSTAR profile) |
UniProt ID (human) | SIX4_HUMAN |
UniProt ID (mouse) | SIX4_MOUSE |
UniProt AC (human) | Q9UIU6 (TFClass) |
UniProt AC (mouse) | Q61321 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 1 human, 1 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 1 |
PCM | SIX4.H12CORE.1.M.C.pcm |
PWM | SIX4.H12CORE.1.M.C.pwm |
PFM | SIX4.H12CORE.1.M.C.pfm |
Alignment | SIX4.H12CORE.1.M.C.words.tsv |
Threshold to P-value map | SIX4.H12CORE.1.M.C.thr |
Motif in other formats | |
JASPAR format | SIX4.H12CORE.1.M.C_jaspar_format.txt |
MEME format | SIX4.H12CORE.1.M.C_meme_format.meme |
Transfac format | SIX4.H12CORE.1.M.C_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 163.0 | 210.0 | 100.0 | 101.0 |
02 | 205.75 | 114.75 | 177.75 | 75.75 |
03 | 33.0 | 247.0 | 73.0 | 221.0 |
04 | 69.0 | 81.0 | 417.0 | 7.0 |
05 | 513.0 | 25.0 | 0.0 | 36.0 |
06 | 0.0 | 169.0 | 0.0 | 405.0 |
07 | 570.0 | 4.0 | 0.0 | 0.0 |
08 | 0.0 | 574.0 | 0.0 | 0.0 |
09 | 38.0 | 280.0 | 245.0 | 11.0 |
10 | 58.0 | 275.0 | 25.0 | 216.0 |
11 | 138.0 | 96.0 | 144.0 | 196.0 |
12 | 206.0 | 213.0 | 51.0 | 104.0 |
13 | 201.0 | 203.0 | 83.0 | 87.0 |
14 | 191.5 | 217.5 | 92.5 | 72.5 |
15 | 141.75 | 210.75 | 120.75 | 100.75 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.284 | 0.366 | 0.174 | 0.176 |
02 | 0.358 | 0.2 | 0.31 | 0.132 |
03 | 0.057 | 0.43 | 0.127 | 0.385 |
04 | 0.12 | 0.141 | 0.726 | 0.012 |
05 | 0.894 | 0.044 | 0.0 | 0.063 |
06 | 0.0 | 0.294 | 0.0 | 0.706 |
07 | 0.993 | 0.007 | 0.0 | 0.0 |
08 | 0.0 | 1.0 | 0.0 | 0.0 |
09 | 0.066 | 0.488 | 0.427 | 0.019 |
10 | 0.101 | 0.479 | 0.044 | 0.376 |
11 | 0.24 | 0.167 | 0.251 | 0.341 |
12 | 0.359 | 0.371 | 0.089 | 0.181 |
13 | 0.35 | 0.354 | 0.145 | 0.152 |
14 | 0.334 | 0.379 | 0.161 | 0.126 |
15 | 0.247 | 0.367 | 0.21 | 0.176 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.126 | 0.377 | -0.356 | -0.347 |
02 | 0.357 | -0.221 | 0.212 | -0.629 |
03 | -1.434 | 0.538 | -0.665 | 0.428 |
04 | -0.72 | -0.563 | 1.06 | -2.827 |
05 | 1.266 | -1.697 | -4.515 | -1.351 |
06 | -4.515 | 0.162 | -4.515 | 1.03 |
07 | 1.371 | -3.257 | -4.515 | -4.515 |
08 | -4.515 | 1.378 | -4.515 | -4.515 |
09 | -1.299 | 0.663 | 0.53 | -2.445 |
10 | -0.89 | 0.645 | -1.697 | 0.405 |
11 | -0.039 | -0.397 | 0.003 | 0.309 |
12 | 0.358 | 0.391 | -1.015 | -0.318 |
13 | 0.334 | 0.344 | -0.54 | -0.493 |
14 | 0.286 | 0.412 | -0.433 | -0.672 |
15 | -0.012 | 0.381 | -0.171 | -0.349 |
P-value | Threshold |
---|---|
0.001 | 5.10486 |
0.0005 | 5.90441 |
0.0001 | 7.35526 |