Motif | SIX4.H12CORE.0.P.B |
Gene (human) | SIX4 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Six4 |
Gene synonyms (mouse) | Arec3 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | SIX4.H12CORE.0.P.B |
Gene (human) | SIX4 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Six4 |
Gene synonyms (mouse) | Arec3 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 14 |
Consensus | WGWAAYnTGAbMCY |
GC content | 43.2% |
Information content (bits; total / per base) | 15.687 / 1.12 |
Data sources | ChIP-Seq |
Aligned words | 437 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 1 (6) | 0.954 | 0.964 | 0.941 | 0.962 | 0.972 | 0.973 | 7.776 | 8.355 | 143.276 | 352.187 |
Mouse | 1 (7) | 0.787 | 0.802 | 0.742 | 0.751 | 0.794 | 0.8 | 3.127 | 3.241 | 157.62 | 182.62 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Methyl HT-SELEX, 1 experiments | median | 0.541 | 0.527 | 0.528 | 0.519 | 0.518 | 0.513 |
best | 0.541 | 0.527 | 0.528 | 0.519 | 0.518 | 0.513 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HD-SINE {3.1.6} (TFClass) |
TF subfamily | SIX4-like {3.1.6.3} (TFClass) |
TFClass ID | TFClass: 3.1.6.3.1 |
HGNC | HGNC:10890 |
MGI | MGI:106034 |
EntrezGene (human) | GeneID:51804 (SSTAR profile) |
EntrezGene (mouse) | GeneID:20474 (SSTAR profile) |
UniProt ID (human) | SIX4_HUMAN |
UniProt ID (mouse) | SIX4_MOUSE |
UniProt AC (human) | Q9UIU6 (TFClass) |
UniProt AC (mouse) | Q61321 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 1 human, 1 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 1 |
PCM | SIX4.H12CORE.0.P.B.pcm |
PWM | SIX4.H12CORE.0.P.B.pwm |
PFM | SIX4.H12CORE.0.P.B.pfm |
Alignment | SIX4.H12CORE.0.P.B.words.tsv |
Threshold to P-value map | SIX4.H12CORE.0.P.B.thr |
Motif in other formats | |
JASPAR format | SIX4.H12CORE.0.P.B_jaspar_format.txt |
MEME format | SIX4.H12CORE.0.P.B_meme_format.meme |
Transfac format | SIX4.H12CORE.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 54.0 | 7.0 | 52.0 | 324.0 |
02 | 2.0 | 0.0 | 432.0 | 3.0 |
03 | 171.0 | 19.0 | 8.0 | 239.0 |
04 | 419.0 | 8.0 | 1.0 | 9.0 |
05 | 431.0 | 2.0 | 2.0 | 2.0 |
06 | 3.0 | 258.0 | 6.0 | 170.0 |
07 | 105.0 | 215.0 | 12.0 | 105.0 |
08 | 9.0 | 47.0 | 13.0 | 368.0 |
09 | 10.0 | 1.0 | 420.0 | 6.0 |
10 | 433.0 | 3.0 | 0.0 | 1.0 |
11 | 26.0 | 223.0 | 97.0 | 91.0 |
12 | 285.0 | 114.0 | 18.0 | 20.0 |
13 | 17.0 | 348.0 | 6.0 | 66.0 |
14 | 24.0 | 280.0 | 51.0 | 82.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.124 | 0.016 | 0.119 | 0.741 |
02 | 0.005 | 0.0 | 0.989 | 0.007 |
03 | 0.391 | 0.043 | 0.018 | 0.547 |
04 | 0.959 | 0.018 | 0.002 | 0.021 |
05 | 0.986 | 0.005 | 0.005 | 0.005 |
06 | 0.007 | 0.59 | 0.014 | 0.389 |
07 | 0.24 | 0.492 | 0.027 | 0.24 |
08 | 0.021 | 0.108 | 0.03 | 0.842 |
09 | 0.023 | 0.002 | 0.961 | 0.014 |
10 | 0.991 | 0.007 | 0.0 | 0.002 |
11 | 0.059 | 0.51 | 0.222 | 0.208 |
12 | 0.652 | 0.261 | 0.041 | 0.046 |
13 | 0.039 | 0.796 | 0.014 | 0.151 |
14 | 0.055 | 0.641 | 0.117 | 0.188 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.691 | -2.565 | -0.727 | 1.078 |
02 | -3.449 | -4.289 | 1.364 | -3.199 |
03 | 0.443 | -1.686 | -2.454 | 0.775 |
04 | 1.334 | -2.454 | -3.783 | -2.354 |
05 | 1.362 | -3.449 | -3.449 | -3.449 |
06 | -3.199 | 0.851 | -2.69 | 0.437 |
07 | -0.039 | 0.67 | -2.103 | -0.039 |
08 | -2.354 | -0.825 | -2.032 | 1.205 |
09 | -2.263 | -3.783 | 1.336 | -2.69 |
10 | 1.367 | -3.199 | -4.289 | -3.783 |
11 | -1.393 | 0.707 | -0.117 | -0.18 |
12 | 0.95 | 0.042 | -1.736 | -1.638 |
13 | -1.789 | 1.149 | -2.69 | -0.495 |
14 | -1.468 | 0.933 | -0.746 | -0.282 |
P-value | Threshold |
---|---|
0.001 | 2.66261 |
0.0005 | 3.88366 |
0.0001 | 6.43622 |