| Motif | SHOX2.H12INVIVO.1.S.D |
| Gene (human) | SHOX2 (GeneCards) |
| Gene synonyms (human) | OG12X, SHOT |
| Gene (mouse) | Shox2 |
| Gene synonyms (mouse) | Og12x, Prx3 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | SHOX2.H12INVIVO.1.S.D |
| Gene (human) | SHOX2 (GeneCards) |
| Gene synonyms (human) | OG12X, SHOT |
| Gene (mouse) | Shox2 |
| Gene synonyms (mouse) | Og12x, Prx3 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 13 |
| Consensus | ndYTAATTARbbn |
| GC content | 34.48% |
| Information content (bits; total / per base) | 13.021 / 1.002 |
| Data sources | HT-SELEX |
| Aligned words | 5733 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 4 experiments | median | 0.991 | 0.983 | 0.986 | 0.976 | 0.939 | 0.933 |
| best | 0.996 | 0.992 | 0.995 | 0.99 | 0.991 | 0.986 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | Paired-related HD {3.1.3} (TFClass) |
| TF subfamily | SHOX {3.1.3.25} (TFClass) |
| TFClass ID | TFClass: 3.1.3.25.2 |
| HGNC | HGNC:10854 |
| MGI | MGI:1201673 |
| EntrezGene (human) | GeneID:6474 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20429 (SSTAR profile) |
| UniProt ID (human) | SHOX2_HUMAN |
| UniProt ID (mouse) | SHOX2_MOUSE |
| UniProt AC (human) | O60902 (TFClass) |
| UniProt AC (mouse) | P70390 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 0 |
| PCM | SHOX2.H12INVIVO.1.S.D.pcm |
| PWM | SHOX2.H12INVIVO.1.S.D.pwm |
| PFM | SHOX2.H12INVIVO.1.S.D.pfm |
| Alignment | SHOX2.H12INVIVO.1.S.D.words.tsv |
| Threshold to P-value map | SHOX2.H12INVIVO.1.S.D.thr |
| Motif in other formats | |
| JASPAR format | SHOX2.H12INVIVO.1.S.D_jaspar_format.txt |
| MEME format | SHOX2.H12INVIVO.1.S.D_meme_format.meme |
| Transfac format | SHOX2.H12INVIVO.1.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2076.75 | 1001.75 | 1270.75 | 1383.75 |
| 02 | 2053.0 | 715.0 | 1824.0 | 1141.0 |
| 03 | 151.0 | 4141.0 | 615.0 | 826.0 |
| 04 | 0.0 | 2380.0 | 0.0 | 3353.0 |
| 05 | 5733.0 | 0.0 | 0.0 | 0.0 |
| 06 | 5733.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 5733.0 |
| 08 | 0.0 | 0.0 | 0.0 | 5733.0 |
| 09 | 5733.0 | 0.0 | 0.0 | 0.0 |
| 10 | 2227.0 | 552.0 | 2954.0 | 0.0 |
| 11 | 159.0 | 1513.0 | 2273.0 | 1788.0 |
| 12 | 641.25 | 1396.25 | 2235.25 | 1460.25 |
| 13 | 1479.75 | 1328.75 | 1498.75 | 1425.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.362 | 0.175 | 0.222 | 0.241 |
| 02 | 0.358 | 0.125 | 0.318 | 0.199 |
| 03 | 0.026 | 0.722 | 0.107 | 0.144 |
| 04 | 0.0 | 0.415 | 0.0 | 0.585 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.0 | 0.0 | 0.0 | 1.0 |
| 09 | 1.0 | 0.0 | 0.0 | 0.0 |
| 10 | 0.388 | 0.096 | 0.515 | 0.0 |
| 11 | 0.028 | 0.264 | 0.396 | 0.312 |
| 12 | 0.112 | 0.244 | 0.39 | 0.255 |
| 13 | 0.258 | 0.232 | 0.261 | 0.249 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.37 | -0.358 | -0.12 | -0.035 |
| 02 | 0.359 | -0.694 | 0.241 | -0.228 |
| 03 | -2.238 | 1.06 | -0.844 | -0.55 |
| 04 | -6.497 | 0.507 | -6.497 | 0.849 |
| 05 | 1.385 | -6.497 | -6.497 | -6.497 |
| 06 | 1.385 | -6.497 | -6.497 | -6.497 |
| 07 | -6.497 | -6.497 | -6.497 | 1.385 |
| 08 | -6.497 | -6.497 | -6.497 | 1.385 |
| 09 | 1.385 | -6.497 | -6.497 | -6.497 |
| 10 | 0.44 | -0.952 | 0.722 | -6.497 |
| 11 | -2.187 | 0.054 | 0.461 | 0.221 |
| 12 | -0.802 | -0.026 | 0.444 | 0.019 |
| 13 | 0.032 | -0.076 | 0.045 | -0.005 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.007715 |
| 0.0005 | 2.154725 |
| 0.0001 | 7.67607 |