MotifSHOX2.H12INVITRO.1.S.C
Gene (human)SHOX2
(GeneCards)
Gene synonyms (human)OG12X, SHOT
Gene (mouse)Shox2
Gene synonyms (mouse)Og12x, Prx3
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length13
ConsensusndYTAATTARbbn
GC content34.48%
Information content (bits; total / per base)13.021 / 1.002
Data sourcesHT-SELEX
Aligned words5733

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 4 experiments median 0.991 0.983 0.986 0.976 0.939 0.933
best 0.996 0.992 0.995 0.99 0.991 0.986
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilySHOX {3.1.3.25} (TFClass)
TFClass IDTFClass: 3.1.3.25.2
HGNCHGNC:10854
MGIMGI:1201673
EntrezGene (human)GeneID:6474
(SSTAR profile)
EntrezGene (mouse)GeneID:20429
(SSTAR profile)
UniProt ID (human)SHOX2_HUMAN
UniProt ID (mouse)SHOX2_MOUSE
UniProt AC (human)O60902
(TFClass)
UniProt AC (mouse)P70390
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 0
PCM
ACGT
012076.751001.751270.751383.75
022053.0715.01824.01141.0
03151.04141.0615.0826.0
040.02380.00.03353.0
055733.00.00.00.0
065733.00.00.00.0
070.00.00.05733.0
080.00.00.05733.0
095733.00.00.00.0
102227.0552.02954.00.0
11159.01513.02273.01788.0
12641.251396.252235.251460.25
131479.751328.751498.751425.75
PFM
ACGT
010.3620.1750.2220.241
020.3580.1250.3180.199
030.0260.7220.1070.144
040.00.4150.00.585
051.00.00.00.0
061.00.00.00.0
070.00.00.01.0
080.00.00.01.0
091.00.00.00.0
100.3880.0960.5150.0
110.0280.2640.3960.312
120.1120.2440.390.255
130.2580.2320.2610.249
PWM
ACGT
010.37-0.358-0.12-0.035
020.359-0.6940.241-0.228
03-2.2381.06-0.844-0.55
04-6.4970.507-6.4970.849
051.385-6.497-6.497-6.497
061.385-6.497-6.497-6.497
07-6.497-6.497-6.4971.385
08-6.497-6.497-6.4971.385
091.385-6.497-6.497-6.497
100.44-0.9520.722-6.497
11-2.1870.0540.4610.221
12-0.802-0.0260.4440.019
130.032-0.0760.045-0.005
Standard thresholds
P-value Threshold
0.001 1.007715
0.0005 2.154725
0.0001 7.67607