MotifSHOX.H12INVIVO.0.SM.D
Gene (human)SHOX
(GeneCards)
Gene synonyms (human)PHOG
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length19
ConsensusnnvbTAATTARnbdddddn
GC content33.24%
Information content (bits; total / per base)13.383 / 0.704
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9887

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.991 0.986 0.984 0.975 0.953 0.942
best 0.995 0.993 0.989 0.983 0.976 0.966
Methyl HT-SELEX, 1 experiments median 0.995 0.992 0.989 0.983 0.976 0.966
best 0.995 0.992 0.989 0.983 0.976 0.966
Non-Methyl HT-SELEX, 3 experiments median 0.988 0.98 0.98 0.968 0.94 0.936
best 0.995 0.993 0.988 0.983 0.966 0.949

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.772 0.619 0.707 0.545
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilySHOX {3.1.3.25} (TFClass)
TFClass IDTFClass: 3.1.3.25.1
HGNCHGNC:10853
MGI
EntrezGene (human)GeneID:6473
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)SHOX_HUMAN
UniProt ID (mouse)
UniProt AC (human)O15266
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012216.52350.53076.52243.5
021641.253611.252864.251770.25
031958.02723.04550.0656.0
04505.04924.01982.02476.0
057.0121.01.09758.0
069881.02.04.00.0
079887.00.00.00.0
080.01.00.09886.0
091.011.029.09846.0
106255.019.03583.030.0
113636.01349.04790.0112.0
122312.02461.02019.03095.0
13883.02028.01564.05412.0
143393.01511.01546.03437.0
155888.01050.01346.01603.0
163323.01136.01600.03828.0
172216.01348.01457.04866.0
183303.75989.752252.753340.75
193111.01568.02573.02635.0
PFM
ACGT
010.2240.2380.3110.227
020.1660.3650.290.179
030.1980.2750.460.066
040.0510.4980.20.25
050.0010.0120.00.987
060.9990.00.00.0
071.00.00.00.0
080.00.00.01.0
090.00.0010.0030.996
100.6330.0020.3620.003
110.3680.1360.4840.011
120.2340.2490.2040.313
130.0890.2050.1580.547
140.3430.1530.1560.348
150.5960.1060.1360.162
160.3360.1150.1620.387
170.2240.1360.1470.492
180.3340.10.2280.338
190.3150.1590.260.267
PWM
ACGT
01-0.109-0.050.219-0.097
02-0.4090.3790.147-0.333
03-0.2330.0970.61-1.324
04-1.5850.689-0.2210.002
05-5.584-2.999-6.621.372
061.385-6.355-5.973-6.981
071.386-6.981-6.981-6.981
08-6.981-6.62-6.9811.385
09-6.62-5.226-4.371.381
100.928-4.7550.371-4.339
110.386-0.6050.661-3.075
12-0.067-0.004-0.2020.225
13-1.028-0.198-0.4570.783
140.317-0.492-0.4690.329
150.867-0.855-0.607-0.433
160.296-0.776-0.4340.437
17-0.109-0.606-0.5280.677
180.29-0.914-0.0930.301
190.23-0.4550.040.064
Standard thresholds
P-value Threshold
0.001 1.87816
0.0005 3.61391
0.0001 7.36391