SATB1.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	SATB1.H12RSNP.0.P.D
Gene (human)	SATB1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Satb1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	WWWWWWRhWRYTAATARhW
GC content	14.71%
Information content (bits; total / per base)	17.394 / 0.915
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (25)	0.921	0.975	0.853	0.948	0.866	0.932	3.799	4.293	203.0	329.276
Mouse	1 (7)	0.969	0.977	0.933	0.95	0.832	0.855	3.175	3.39	465.796	532.658

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Homeo domain factors {3.1} (TFClass)
TF family	HD-CUT {3.1.9} (TFClass)
TF subfamily	SATB {3.1.9.3} (TFClass)
TFClass ID	TFClass: 3.1.9.3.1
HGNC	HGNC:10541
MGI	MGI:105084
EntrezGene (human)	GeneID:6304 (SSTAR profile)
EntrezGene (mouse)	GeneID:20230 (SSTAR profile)
UniProt ID (human)	SATB1_HUMAN
UniProt ID (mouse)	SATB1_MOUSE
UniProt AC (human)	Q01826 (TFClass)
UniProt AC (mouse)	Q60611 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 1 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	SATB1.H12RSNP.0.P.D.pcm
PWM	SATB1.H12RSNP.0.P.D.pwm
PFM	SATB1.H12RSNP.0.P.D.pfm
Alignment	SATB1.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	SATB1.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	SATB1.H12RSNP.0.P.D_jaspar_format.txt
MEME format	SATB1.H12RSNP.0.P.D_meme_format.meme
Transfac format	SATB1.H12RSNP.0.P.D_transfac_format.txt
Homer format	SATB1.H12RSNP.0.P.D_homer_format_0.001.txt SATB1.H12RSNP.0.P.D_homer_format_0.0005.txt SATB1.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	531.0	91.0	12.0	366.0
02	310.0	109.0	31.0	550.0
03	502.0	86.0	3.0	409.0
04	636.0	44.0	17.0	303.0
05	242.0	94.0	44.0	620.0
06	446.0	16.0	46.0	492.0
07	722.0	37.0	126.0	115.0
08	348.0	159.0	108.0	385.0
09	245.0	72.0	110.0	573.0
10	642.0	84.0	174.0	100.0
11	3.0	593.0	14.0	390.0
12	0.0	1.0	1.0	998.0
13	997.0	0.0	3.0	0.0
14	990.0	0.0	0.0	10.0
15	0.0	0.0	0.0	1000.0
16	914.0	3.0	76.0	7.0
17	718.0	69.0	152.0	61.0
18	188.0	205.0	62.0	545.0
19	353.0	105.0	48.0	494.0

PFM

	A	C	G	T
01	0.531	0.091	0.012	0.366
02	0.31	0.109	0.031	0.55
03	0.502	0.086	0.003	0.409
04	0.636	0.044	0.017	0.303
05	0.242	0.094	0.044	0.62
06	0.446	0.016	0.046	0.492
07	0.722	0.037	0.126	0.115
08	0.348	0.159	0.108	0.385
09	0.245	0.072	0.11	0.573
10	0.642	0.084	0.174	0.1
11	0.003	0.593	0.014	0.39
12	0.0	0.001	0.001	0.998
13	0.997	0.0	0.003	0.0
14	0.99	0.0	0.0	0.01
15	0.0	0.0	0.0	1.0
16	0.914	0.003	0.076	0.007
17	0.718	0.069	0.152	0.061
18	0.188	0.205	0.062	0.545
19	0.353	0.105	0.048	0.494

PWM

	A	C	G	T
01	0.75	-0.999	-2.909	0.379
02	0.214	-0.821	-2.04	0.785
03	0.694	-1.054	-3.975	0.49
04	0.93	-1.706	-2.598	0.191
05	-0.032	-0.967	-1.706	0.904
06	0.576	-2.653	-1.663	0.674
07	1.056	-1.872	-0.678	-0.769
08	0.329	-0.449	-0.83	0.429
09	-0.02	-1.228	-0.812	0.826
10	0.939	-1.077	-0.359	-0.906
11	-3.975	0.86	-2.773	0.442
12	-4.982	-4.525	-4.525	1.379
13	1.378	-4.982	-3.975	-4.982
14	1.371	-4.982	-4.982	-3.066
15	-4.982	-4.982	-4.982	1.381
16	1.291	-3.975	-1.175	-3.362
17	1.051	-1.27	-0.493	-1.39
18	-0.283	-0.197	-1.374	0.776
19	0.343	-0.858	-1.622	0.678

Standard thresholds

P-value	Threshold
0.001	1.24681
0.0005	2.69621
0.0001	5.70911