MotifSATB1.H12INVIVO.1.P.B
Gene (human)SATB1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Satb1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length12
ConsensusWWCTAATARYWW
GC content15.81%
Information content (bits; total / per base)13.71 / 1.142
Data sourcesChIP-Seq
Aligned words751

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 5 (25) 0.935 0.97 0.841 0.935 0.854 0.911 3.187 3.535 184.886 325.959
Mouse 1 (7) 0.973 0.974 0.938 0.942 0.832 0.849 2.882 3.036 448.119 512.886
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHD-CUT {3.1.9} (TFClass)
TF subfamilySATB {3.1.9.3} (TFClass)
TFClass IDTFClass: 3.1.9.3.1
HGNCHGNC:10541
MGIMGI:105084
EntrezGene (human)GeneID:6304
(SSTAR profile)
EntrezGene (mouse)GeneID:20230
(SSTAR profile)
UniProt ID (human)SATB1_HUMAN
UniProt ID (mouse)SATB1_MOUSE
UniProt AC (human)Q01826
(TFClass)
UniProt AC (mouse)Q60611
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 5 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01191.059.067.0434.0
02519.066.065.0101.0
030.0471.02.0278.0
040.01.00.0750.0
05751.00.00.00.0
06750.00.01.00.0
070.02.00.0749.0
08666.00.081.04.0
09499.057.0145.050.0
10119.0147.028.0457.0
11241.051.025.0434.0
12484.093.064.0110.0
PFM
ACGT
010.2540.0790.0890.578
020.6910.0880.0870.134
030.00.6270.0030.37
040.00.0010.00.999
051.00.00.00.0
060.9990.00.0010.0
070.00.0030.00.997
080.8870.00.1080.005
090.6640.0760.1930.067
100.1580.1960.0370.609
110.3210.0680.0330.578
120.6440.1240.0850.146
PWM
ACGT
010.017-1.139-1.0150.833
021.011-1.029-1.044-0.613
03-4.740.914-3.9480.39
04-4.74-4.267-4.741.378
051.38-4.74-4.74-4.74
061.378-4.74-4.267-4.74
07-4.74-3.948-4.741.377
081.26-4.74-0.829-3.511
090.972-1.172-0.256-1.299
10-0.451-0.242-1.8540.884
110.248-1.28-1.9610.833
120.942-0.694-1.059-0.528
Standard thresholds
P-value Threshold
0.001 3.027665
0.0005 4.381465
0.0001 7.12253