| Motif | SATB1.H12INVIVO.1.P.B |
| Gene (human) | SATB1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Satb1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | B |
| Motif | SATB1.H12INVIVO.1.P.B |
| Gene (human) | SATB1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Satb1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | B |
| Motif length | 12 |
| Consensus | WWCTAATARYWW |
| GC content | 15.81% |
| Information content (bits; total / per base) | 13.71 / 1.142 |
| Data sources | ChIP-Seq |
| Aligned words | 751 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (25) | 0.935 | 0.97 | 0.841 | 0.935 | 0.854 | 0.911 | 3.187 | 3.535 | 184.886 | 325.959 |
| Mouse | 1 (7) | 0.973 | 0.974 | 0.938 | 0.942 | 0.832 | 0.849 | 2.882 | 3.036 | 448.119 | 512.886 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HD-CUT {3.1.9} (TFClass) |
| TF subfamily | SATB {3.1.9.3} (TFClass) |
| TFClass ID | TFClass: 3.1.9.3.1 |
| HGNC | HGNC:10541 |
| MGI | MGI:105084 |
| EntrezGene (human) | GeneID:6304 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20230 (SSTAR profile) |
| UniProt ID (human) | SATB1_HUMAN |
| UniProt ID (mouse) | SATB1_MOUSE |
| UniProt AC (human) | Q01826 (TFClass) |
| UniProt AC (mouse) | Q60611 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | SATB1.H12INVIVO.1.P.B.pcm |
| PWM | SATB1.H12INVIVO.1.P.B.pwm |
| PFM | SATB1.H12INVIVO.1.P.B.pfm |
| Alignment | SATB1.H12INVIVO.1.P.B.words.tsv |
| Threshold to P-value map | SATB1.H12INVIVO.1.P.B.thr |
| Motif in other formats | |
| JASPAR format | SATB1.H12INVIVO.1.P.B_jaspar_format.txt |
| MEME format | SATB1.H12INVIVO.1.P.B_meme_format.meme |
| Transfac format | SATB1.H12INVIVO.1.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 191.0 | 59.0 | 67.0 | 434.0 |
| 02 | 519.0 | 66.0 | 65.0 | 101.0 |
| 03 | 0.0 | 471.0 | 2.0 | 278.0 |
| 04 | 0.0 | 1.0 | 0.0 | 750.0 |
| 05 | 751.0 | 0.0 | 0.0 | 0.0 |
| 06 | 750.0 | 0.0 | 1.0 | 0.0 |
| 07 | 0.0 | 2.0 | 0.0 | 749.0 |
| 08 | 666.0 | 0.0 | 81.0 | 4.0 |
| 09 | 499.0 | 57.0 | 145.0 | 50.0 |
| 10 | 119.0 | 147.0 | 28.0 | 457.0 |
| 11 | 241.0 | 51.0 | 25.0 | 434.0 |
| 12 | 484.0 | 93.0 | 64.0 | 110.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.254 | 0.079 | 0.089 | 0.578 |
| 02 | 0.691 | 0.088 | 0.087 | 0.134 |
| 03 | 0.0 | 0.627 | 0.003 | 0.37 |
| 04 | 0.0 | 0.001 | 0.0 | 0.999 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.999 | 0.0 | 0.001 | 0.0 |
| 07 | 0.0 | 0.003 | 0.0 | 0.997 |
| 08 | 0.887 | 0.0 | 0.108 | 0.005 |
| 09 | 0.664 | 0.076 | 0.193 | 0.067 |
| 10 | 0.158 | 0.196 | 0.037 | 0.609 |
| 11 | 0.321 | 0.068 | 0.033 | 0.578 |
| 12 | 0.644 | 0.124 | 0.085 | 0.146 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.017 | -1.139 | -1.015 | 0.833 |
| 02 | 1.011 | -1.029 | -1.044 | -0.613 |
| 03 | -4.74 | 0.914 | -3.948 | 0.39 |
| 04 | -4.74 | -4.267 | -4.74 | 1.378 |
| 05 | 1.38 | -4.74 | -4.74 | -4.74 |
| 06 | 1.378 | -4.74 | -4.267 | -4.74 |
| 07 | -4.74 | -3.948 | -4.74 | 1.377 |
| 08 | 1.26 | -4.74 | -0.829 | -3.511 |
| 09 | 0.972 | -1.172 | -0.256 | -1.299 |
| 10 | -0.451 | -0.242 | -1.854 | 0.884 |
| 11 | 0.248 | -1.28 | -1.961 | 0.833 |
| 12 | 0.942 | -0.694 | -1.059 | -0.528 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.027665 |
| 0.0005 | 4.381465 |
| 0.0001 | 7.12253 |