MotifSATB1.H12INVITRO.0.P.D
Gene (human)SATB1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Satb1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length19
ConsensusWWWWWWRhWRYTAATARhW
GC content14.71%
Information content (bits; total / per base)17.394 / 0.915
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 5 (25) 0.921 0.975 0.853 0.948 0.866 0.932 3.799 4.293 203.0 329.276
Mouse 1 (7) 0.969 0.977 0.933 0.95 0.832 0.855 3.175 3.39 465.796 532.658
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHD-CUT {3.1.9} (TFClass)
TF subfamilySATB {3.1.9.3} (TFClass)
TFClass IDTFClass: 3.1.9.3.1
HGNCHGNC:10541
MGIMGI:105084
EntrezGene (human)GeneID:6304
(SSTAR profile)
EntrezGene (mouse)GeneID:20230
(SSTAR profile)
UniProt ID (human)SATB1_HUMAN
UniProt ID (mouse)SATB1_MOUSE
UniProt AC (human)Q01826
(TFClass)
UniProt AC (mouse)Q60611
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 5 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01531.091.012.0366.0
02310.0109.031.0550.0
03502.086.03.0409.0
04636.044.017.0303.0
05242.094.044.0620.0
06446.016.046.0492.0
07722.037.0126.0115.0
08348.0159.0108.0385.0
09245.072.0110.0573.0
10642.084.0174.0100.0
113.0593.014.0390.0
120.01.01.0998.0
13997.00.03.00.0
14990.00.00.010.0
150.00.00.01000.0
16914.03.076.07.0
17718.069.0152.061.0
18188.0205.062.0545.0
19353.0105.048.0494.0
PFM
ACGT
010.5310.0910.0120.366
020.310.1090.0310.55
030.5020.0860.0030.409
040.6360.0440.0170.303
050.2420.0940.0440.62
060.4460.0160.0460.492
070.7220.0370.1260.115
080.3480.1590.1080.385
090.2450.0720.110.573
100.6420.0840.1740.1
110.0030.5930.0140.39
120.00.0010.0010.998
130.9970.00.0030.0
140.990.00.00.01
150.00.00.01.0
160.9140.0030.0760.007
170.7180.0690.1520.061
180.1880.2050.0620.545
190.3530.1050.0480.494
PWM
ACGT
010.75-0.999-2.9090.379
020.214-0.821-2.040.785
030.694-1.054-3.9750.49
040.93-1.706-2.5980.191
05-0.032-0.967-1.7060.904
060.576-2.653-1.6630.674
071.056-1.872-0.678-0.769
080.329-0.449-0.830.429
09-0.02-1.228-0.8120.826
100.939-1.077-0.359-0.906
11-3.9750.86-2.7730.442
12-4.982-4.525-4.5251.379
131.378-4.982-3.975-4.982
141.371-4.982-4.982-3.066
15-4.982-4.982-4.9821.381
161.291-3.975-1.175-3.362
171.051-1.27-0.493-1.39
18-0.283-0.197-1.3740.776
190.343-0.858-1.6220.678
Standard thresholds
P-value Threshold
0.001 1.24681
0.0005 2.69621
0.0001 5.70911