Motif | SATB1.H12CORE.0.P.B |
Gene (human) | SATB1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Satb1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | SATB1.H12CORE.0.P.B |
Gene (human) | SATB1 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Satb1 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 19 |
Consensus | WWWWWWRhWRYTAATARhW |
GC content | 14.71% |
Information content (bits; total / per base) | 17.394 / 0.915 |
Data sources | ChIP-Seq |
Aligned words | 1000 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 5 (25) | 0.921 | 0.975 | 0.853 | 0.948 | 0.866 | 0.932 | 3.799 | 4.293 | 203.0 | 329.276 |
Mouse | 1 (7) | 0.969 | 0.977 | 0.933 | 0.95 | 0.832 | 0.855 | 3.175 | 3.39 | 465.796 | 532.658 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HD-CUT {3.1.9} (TFClass) |
TF subfamily | SATB {3.1.9.3} (TFClass) |
TFClass ID | TFClass: 3.1.9.3.1 |
HGNC | HGNC:10541 |
MGI | MGI:105084 |
EntrezGene (human) | GeneID:6304 (SSTAR profile) |
EntrezGene (mouse) | GeneID:20230 (SSTAR profile) |
UniProt ID (human) | SATB1_HUMAN |
UniProt ID (mouse) | SATB1_MOUSE |
UniProt AC (human) | Q01826 (TFClass) |
UniProt AC (mouse) | Q60611 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 5 human, 1 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | SATB1.H12CORE.0.P.B.pcm |
PWM | SATB1.H12CORE.0.P.B.pwm |
PFM | SATB1.H12CORE.0.P.B.pfm |
Alignment | SATB1.H12CORE.0.P.B.words.tsv |
Threshold to P-value map | SATB1.H12CORE.0.P.B.thr |
Motif in other formats | |
JASPAR format | SATB1.H12CORE.0.P.B_jaspar_format.txt |
MEME format | SATB1.H12CORE.0.P.B_meme_format.meme |
Transfac format | SATB1.H12CORE.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 531.0 | 91.0 | 12.0 | 366.0 |
02 | 310.0 | 109.0 | 31.0 | 550.0 |
03 | 502.0 | 86.0 | 3.0 | 409.0 |
04 | 636.0 | 44.0 | 17.0 | 303.0 |
05 | 242.0 | 94.0 | 44.0 | 620.0 |
06 | 446.0 | 16.0 | 46.0 | 492.0 |
07 | 722.0 | 37.0 | 126.0 | 115.0 |
08 | 348.0 | 159.0 | 108.0 | 385.0 |
09 | 245.0 | 72.0 | 110.0 | 573.0 |
10 | 642.0 | 84.0 | 174.0 | 100.0 |
11 | 3.0 | 593.0 | 14.0 | 390.0 |
12 | 0.0 | 1.0 | 1.0 | 998.0 |
13 | 997.0 | 0.0 | 3.0 | 0.0 |
14 | 990.0 | 0.0 | 0.0 | 10.0 |
15 | 0.0 | 0.0 | 0.0 | 1000.0 |
16 | 914.0 | 3.0 | 76.0 | 7.0 |
17 | 718.0 | 69.0 | 152.0 | 61.0 |
18 | 188.0 | 205.0 | 62.0 | 545.0 |
19 | 353.0 | 105.0 | 48.0 | 494.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.531 | 0.091 | 0.012 | 0.366 |
02 | 0.31 | 0.109 | 0.031 | 0.55 |
03 | 0.502 | 0.086 | 0.003 | 0.409 |
04 | 0.636 | 0.044 | 0.017 | 0.303 |
05 | 0.242 | 0.094 | 0.044 | 0.62 |
06 | 0.446 | 0.016 | 0.046 | 0.492 |
07 | 0.722 | 0.037 | 0.126 | 0.115 |
08 | 0.348 | 0.159 | 0.108 | 0.385 |
09 | 0.245 | 0.072 | 0.11 | 0.573 |
10 | 0.642 | 0.084 | 0.174 | 0.1 |
11 | 0.003 | 0.593 | 0.014 | 0.39 |
12 | 0.0 | 0.001 | 0.001 | 0.998 |
13 | 0.997 | 0.0 | 0.003 | 0.0 |
14 | 0.99 | 0.0 | 0.0 | 0.01 |
15 | 0.0 | 0.0 | 0.0 | 1.0 |
16 | 0.914 | 0.003 | 0.076 | 0.007 |
17 | 0.718 | 0.069 | 0.152 | 0.061 |
18 | 0.188 | 0.205 | 0.062 | 0.545 |
19 | 0.353 | 0.105 | 0.048 | 0.494 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.75 | -0.999 | -2.909 | 0.379 |
02 | 0.214 | -0.821 | -2.04 | 0.785 |
03 | 0.694 | -1.054 | -3.975 | 0.49 |
04 | 0.93 | -1.706 | -2.598 | 0.191 |
05 | -0.032 | -0.967 | -1.706 | 0.904 |
06 | 0.576 | -2.653 | -1.663 | 0.674 |
07 | 1.056 | -1.872 | -0.678 | -0.769 |
08 | 0.329 | -0.449 | -0.83 | 0.429 |
09 | -0.02 | -1.228 | -0.812 | 0.826 |
10 | 0.939 | -1.077 | -0.359 | -0.906 |
11 | -3.975 | 0.86 | -2.773 | 0.442 |
12 | -4.982 | -4.525 | -4.525 | 1.379 |
13 | 1.378 | -4.982 | -3.975 | -4.982 |
14 | 1.371 | -4.982 | -4.982 | -3.066 |
15 | -4.982 | -4.982 | -4.982 | 1.381 |
16 | 1.291 | -3.975 | -1.175 | -3.362 |
17 | 1.051 | -1.27 | -0.493 | -1.39 |
18 | -0.283 | -0.197 | -1.374 | 0.776 |
19 | 0.343 | -0.858 | -1.622 | 0.678 |
P-value | Threshold |
---|---|
0.001 | 1.24681 |
0.0005 | 2.69621 |
0.0001 | 5.70911 |