MotifSALL4.H12INVIVO.0.P.B
Gene (human)SALL4
(GeneCards)
Gene synonyms (human)ZNF797
Gene (mouse)Sall4
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length11
ConsensusndGGGWGKRRb
GC content68.65%
Information content (bits; total / per base)10.089 / 0.917
Data sourcesChIP-Seq
Aligned words999

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 3 (18) 0.711 0.747 0.54 0.576 0.745 0.795 2.31 2.532 29.199 46.432
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilySAL-like {2.3.4.3} (TFClass)
TFClass IDTFClass: 2.3.4.3.4
HGNCHGNC:15924
MGIMGI:2139360
EntrezGene (human)GeneID:57167
(SSTAR profile)
EntrezGene (mouse)GeneID:99377
(SSTAR profile)
UniProt ID (human)SALL4_HUMAN
UniProt ID (mouse)SALL4_MOUSE
UniProt AC (human)Q9UJQ4
(TFClass)
UniProt AC (mouse)Q8BX22
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 3 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01157.0355.0260.0227.0
02440.027.0201.0331.0
0359.02.0923.015.0
047.03.0964.025.0
0521.091.0878.09.0
06291.056.09.0643.0
0713.010.0953.023.0
08113.014.0584.0288.0
09203.07.0749.040.0
10115.021.0771.092.0
11118.0403.0263.0215.0
PFM
ACGT
010.1570.3550.260.227
020.440.0270.2010.331
030.0590.0020.9240.015
040.0070.0030.9650.025
050.0210.0910.8790.009
060.2910.0560.0090.644
070.0130.010.9540.023
080.1130.0140.5850.288
090.2030.0070.750.04
100.1150.0210.7720.092
110.1180.4030.2630.215
PWM
ACGT
01-0.460.350.04-0.095
020.563-2.17-0.2150.28
03-1.421-4.2121.302-2.71
04-3.361-3.9741.346-2.242
05-2.404-0.9981.252-3.155
060.152-1.472-3.1550.941
07-2.838-3.0651.334-2.319
08-0.785-2.7720.8460.142
09-0.206-3.3611.094-1.796
10-0.768-2.4041.123-0.987
11-0.7420.4760.051-0.149
Standard thresholds
P-value Threshold
0.001 4.718265
0.0005 5.5876
0.0001 7.388685