SALL4.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	SALL4.H12INVIVO.0.P.B
Gene (human)	SALL4 (GeneCards)
Gene synonyms (human)	ZNF797
Gene (mouse)	Sall4
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	11
Consensus	ndGGGWGKRRb
GC content	68.65%
Information content (bits; total / per base)	10.089 / 0.917
Data sources	ChIP-Seq
Aligned words	999

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	3 (18)	0.711	0.747	0.54	0.576	0.745	0.795	2.31	2.532	29.199	46.432

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	SAL-like {2.3.4.3} (TFClass)
TFClass ID	TFClass: 2.3.4.3.4
HGNC	HGNC:15924
MGI	MGI:2139360
EntrezGene (human)	GeneID:57167 (SSTAR profile)
EntrezGene (mouse)	GeneID:99377 (SSTAR profile)
UniProt ID (human)	SALL4_HUMAN
UniProt ID (mouse)	SALL4_MOUSE
UniProt AC (human)	Q9UJQ4 (TFClass)
UniProt AC (mouse)	Q8BX22 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 3 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	SALL4.H12INVIVO.0.P.B.pcm
PWM	SALL4.H12INVIVO.0.P.B.pwm
PFM	SALL4.H12INVIVO.0.P.B.pfm
Alignment	SALL4.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	SALL4.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	SALL4.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	SALL4.H12INVIVO.0.P.B_meme_format.meme
Transfac format	SALL4.H12INVIVO.0.P.B_transfac_format.txt
Homer format	SALL4.H12INVIVO.0.P.B_homer_format_0.001.txt SALL4.H12INVIVO.0.P.B_homer_format_0.0005.txt SALL4.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	157.0	355.0	260.0	227.0
02	440.0	27.0	201.0	331.0
03	59.0	2.0	923.0	15.0
04	7.0	3.0	964.0	25.0
05	21.0	91.0	878.0	9.0
06	291.0	56.0	9.0	643.0
07	13.0	10.0	953.0	23.0
08	113.0	14.0	584.0	288.0
09	203.0	7.0	749.0	40.0
10	115.0	21.0	771.0	92.0
11	118.0	403.0	263.0	215.0

PFM

	A	C	G	T
01	0.157	0.355	0.26	0.227
02	0.44	0.027	0.201	0.331
03	0.059	0.002	0.924	0.015
04	0.007	0.003	0.965	0.025
05	0.021	0.091	0.879	0.009
06	0.291	0.056	0.009	0.644
07	0.013	0.01	0.954	0.023
08	0.113	0.014	0.585	0.288
09	0.203	0.007	0.75	0.04
10	0.115	0.021	0.772	0.092
11	0.118	0.403	0.263	0.215

PWM

	A	C	G	T
01	-0.46	0.35	0.04	-0.095
02	0.563	-2.17	-0.215	0.28
03	-1.421	-4.212	1.302	-2.71
04	-3.361	-3.974	1.346	-2.242
05	-2.404	-0.998	1.252	-3.155
06	0.152	-1.472	-3.155	0.941
07	-2.838	-3.065	1.334	-2.319
08	-0.785	-2.772	0.846	0.142
09	-0.206	-3.361	1.094	-1.796
10	-0.768	-2.404	1.123	-0.987
11	-0.742	0.476	0.051	-0.149

Standard thresholds

P-value	Threshold
0.001	4.718265
0.0005	5.5876
0.0001	7.388685