| Motif | SALL4.H12INVITRO.0.P.D |
| Gene (human) | SALL4 (GeneCards) |
| Gene synonyms (human) | ZNF797 |
| Gene (mouse) | Sall4 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | SALL4.H12INVITRO.0.P.D |
| Gene (human) | SALL4 (GeneCards) |
| Gene synonyms (human) | ZNF797 |
| Gene (mouse) | Sall4 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | ndGGGWGKRRb |
| GC content | 68.65% |
| Information content (bits; total / per base) | 10.089 / 0.917 |
| Data sources | ChIP-Seq |
| Aligned words | 999 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 3 (18) | 0.711 | 0.747 | 0.54 | 0.576 | 0.745 | 0.795 | 2.31 | 2.532 | 29.199 | 46.432 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | SAL-like {2.3.4.3} (TFClass) |
| TFClass ID | TFClass: 2.3.4.3.4 |
| HGNC | HGNC:15924 |
| MGI | MGI:2139360 |
| EntrezGene (human) | GeneID:57167 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:99377 (SSTAR profile) |
| UniProt ID (human) | SALL4_HUMAN |
| UniProt ID (mouse) | SALL4_MOUSE |
| UniProt AC (human) | Q9UJQ4 (TFClass) |
| UniProt AC (mouse) | Q8BX22 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 3 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | SALL4.H12INVITRO.0.P.D.pcm |
| PWM | SALL4.H12INVITRO.0.P.D.pwm |
| PFM | SALL4.H12INVITRO.0.P.D.pfm |
| Alignment | SALL4.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | SALL4.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | SALL4.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | SALL4.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | SALL4.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 157.0 | 355.0 | 260.0 | 227.0 |
| 02 | 440.0 | 27.0 | 201.0 | 331.0 |
| 03 | 59.0 | 2.0 | 923.0 | 15.0 |
| 04 | 7.0 | 3.0 | 964.0 | 25.0 |
| 05 | 21.0 | 91.0 | 878.0 | 9.0 |
| 06 | 291.0 | 56.0 | 9.0 | 643.0 |
| 07 | 13.0 | 10.0 | 953.0 | 23.0 |
| 08 | 113.0 | 14.0 | 584.0 | 288.0 |
| 09 | 203.0 | 7.0 | 749.0 | 40.0 |
| 10 | 115.0 | 21.0 | 771.0 | 92.0 |
| 11 | 118.0 | 403.0 | 263.0 | 215.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.157 | 0.355 | 0.26 | 0.227 |
| 02 | 0.44 | 0.027 | 0.201 | 0.331 |
| 03 | 0.059 | 0.002 | 0.924 | 0.015 |
| 04 | 0.007 | 0.003 | 0.965 | 0.025 |
| 05 | 0.021 | 0.091 | 0.879 | 0.009 |
| 06 | 0.291 | 0.056 | 0.009 | 0.644 |
| 07 | 0.013 | 0.01 | 0.954 | 0.023 |
| 08 | 0.113 | 0.014 | 0.585 | 0.288 |
| 09 | 0.203 | 0.007 | 0.75 | 0.04 |
| 10 | 0.115 | 0.021 | 0.772 | 0.092 |
| 11 | 0.118 | 0.403 | 0.263 | 0.215 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.46 | 0.35 | 0.04 | -0.095 |
| 02 | 0.563 | -2.17 | -0.215 | 0.28 |
| 03 | -1.421 | -4.212 | 1.302 | -2.71 |
| 04 | -3.361 | -3.974 | 1.346 | -2.242 |
| 05 | -2.404 | -0.998 | 1.252 | -3.155 |
| 06 | 0.152 | -1.472 | -3.155 | 0.941 |
| 07 | -2.838 | -3.065 | 1.334 | -2.319 |
| 08 | -0.785 | -2.772 | 0.846 | 0.142 |
| 09 | -0.206 | -3.361 | 1.094 | -1.796 |
| 10 | -0.768 | -2.404 | 1.123 | -0.987 |
| 11 | -0.742 | 0.476 | 0.051 | -0.149 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.718265 |
| 0.0005 | 5.5876 |
| 0.0001 | 7.388685 |