SALL1.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	SALL1.H12INVIVO.0.P.C
Gene (human)	SALL1 (GeneCards)
Gene synonyms (human)	SAL1, ZNF794
Gene (mouse)	Sall1
Gene synonyms (mouse)	Sal3
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	16
Consensus	ddddbdGGSWGKGGnn
GC content	67.64%
Information content (bits; total / per base)	10.316 / 0.645
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	1 (7)	0.68	0.685	0.474	0.499	0.744	0.786	2.839	3.034	29.013	38.886

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	SAL-like {2.3.4.3} (TFClass)
TFClass ID	TFClass: 2.3.4.3.1
HGNC	HGNC:10524
MGI	MGI:1889585
EntrezGene (human)	GeneID:6299 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	SALL1_HUMAN
UniProt ID (mouse)	SALL1_MOUSE
UniProt AC (human)	Q9NSC2 (TFClass)
UniProt AC (mouse)	Q9ER74 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 1 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	SALL1.H12INVIVO.0.P.C.pcm
PWM	SALL1.H12INVIVO.0.P.C.pwm
PFM	SALL1.H12INVIVO.0.P.C.pfm
Alignment	SALL1.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	SALL1.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	SALL1.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	SALL1.H12INVIVO.0.P.C_meme_format.meme
Transfac format	SALL1.H12INVIVO.0.P.C_transfac_format.txt
Homer format	SALL1.H12INVIVO.0.P.C_homer_format_0.001.txt SALL1.H12INVIVO.0.P.C_homer_format_0.0005.txt SALL1.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	228.0	158.0	447.0	167.0
02	225.0	138.0	413.0	224.0
03	248.0	121.0	432.0	199.0
04	145.0	108.0	457.0	290.0
05	93.0	257.0	533.0	117.0
06	376.0	10.0	381.0	233.0
07	57.0	1.0	923.0	19.0
08	12.0	18.0	937.0	33.0
09	42.0	209.0	733.0	16.0
10	366.0	49.0	34.0	551.0
11	39.0	5.0	919.0	37.0
12	106.0	29.0	648.0	217.0
13	95.0	20.0	813.0	72.0
14	127.0	26.0	812.0	35.0
15	175.0	336.0	317.0	172.0
16	311.0	268.0	271.0	150.0

PFM

	A	C	G	T
01	0.228	0.158	0.447	0.167
02	0.225	0.138	0.413	0.224
03	0.248	0.121	0.432	0.199
04	0.145	0.108	0.457	0.29
05	0.093	0.257	0.533	0.117
06	0.376	0.01	0.381	0.233
07	0.057	0.001	0.923	0.019
08	0.012	0.018	0.937	0.033
09	0.042	0.209	0.733	0.016
10	0.366	0.049	0.034	0.551
11	0.039	0.005	0.919	0.037
12	0.106	0.029	0.648	0.217
13	0.095	0.02	0.813	0.072
14	0.127	0.026	0.812	0.035
15	0.175	0.336	0.317	0.172
16	0.311	0.268	0.271	0.15

PWM

	A	C	G	T
01	-0.091	-0.455	0.578	-0.4
02	-0.105	-0.589	0.499	-0.109
03	-0.008	-0.718	0.544	-0.226
04	-0.54	-0.83	0.6	0.147
05	-0.977	0.027	0.753	-0.752
06	0.406	-3.066	0.419	-0.07
07	-1.455	-4.525	1.301	-2.497
08	-2.909	-2.546	1.316	-1.981
09	-1.75	-0.178	1.071	-2.653
10	0.379	-1.602	-1.952	0.787
11	-1.821	-3.622	1.297	-1.872
12	-0.849	-2.103	0.948	-0.141
13	-0.956	-2.45	1.175	-1.228
14	-0.671	-2.206	1.173	-1.925
15	-0.354	0.294	0.236	-0.371
16	0.217	0.069	0.08	-0.506

Standard thresholds

P-value	Threshold
0.001	4.65046
0.0005	5.49916
0.0001	7.23496