| Motif | RXRG.H12INVITRO.2.P.B |
| Gene (human) | RXRG (GeneCards) |
| Gene synonyms (human) | NR2B3 |
| Gene (mouse) | Rxrg |
| Gene synonyms (mouse) | Nr2b3 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 2 |
| Quality | B |
| Motif | RXRG.H12INVITRO.2.P.B |
| Gene (human) | RXRG (GeneCards) |
| Gene synonyms (human) | NR2B3 |
| Gene (mouse) | Rxrg |
| Gene synonyms (mouse) | Nr2b3 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 2 |
| Quality | B |
| Motif length | 23 |
| Consensus | RdKSMvRAGKTCAAGGYCAbbbY |
| GC content | 52.26% |
| Information content (bits; total / per base) | 19.749 / 0.859 |
| Data sources | ChIP-Seq |
| Aligned words | 248 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 3 (14) | 0.697 | 0.922 | 0.605 | 0.867 | 0.669 | 0.942 | 4.086 | 8.946 | 39.276 | 194.854 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 5 experiments | median | 0.974 | 0.956 | 0.944 | 0.917 | 0.836 | 0.834 |
| best | 0.985 | 0.976 | 0.961 | 0.941 | 0.934 | 0.906 | |
| Methyl HT-SELEX, 1 experiments | median | 0.974 | 0.956 | 0.961 | 0.938 | 0.934 | 0.906 |
| best | 0.974 | 0.956 | 0.961 | 0.938 | 0.934 | 0.906 | |
| Non-Methyl HT-SELEX, 4 experiments | median | 0.974 | 0.956 | 0.933 | 0.911 | 0.805 | 0.808 |
| best | 0.985 | 0.976 | 0.955 | 0.941 | 0.884 | 0.856 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.574 | 0.136 | -0.07 | 0.004 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | RXR-related receptors {2.1.3} (TFClass) |
| TF subfamily | RXR (NR2B) {2.1.3.1} (TFClass) |
| TFClass ID | TFClass: 2.1.3.1.3 |
| HGNC | HGNC:10479 |
| MGI | MGI:98216 |
| EntrezGene (human) | GeneID:6258 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:20183 (SSTAR profile) |
| UniProt ID (human) | RXRG_HUMAN |
| UniProt ID (mouse) | RXRG_MOUSE |
| UniProt AC (human) | P48443 (TFClass) |
| UniProt AC (mouse) | P28705 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 3 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 1 |
| PCM | RXRG.H12INVITRO.2.P.B.pcm |
| PWM | RXRG.H12INVITRO.2.P.B.pwm |
| PFM | RXRG.H12INVITRO.2.P.B.pfm |
| Alignment | RXRG.H12INVITRO.2.P.B.words.tsv |
| Threshold to P-value map | RXRG.H12INVITRO.2.P.B.thr |
| Motif in other formats | |
| JASPAR format | RXRG.H12INVITRO.2.P.B_jaspar_format.txt |
| MEME format | RXRG.H12INVITRO.2.P.B_meme_format.meme |
| Transfac format | RXRG.H12INVITRO.2.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 44.0 | 30.0 | 152.0 | 22.0 |
| 02 | 82.0 | 26.0 | 102.0 | 38.0 |
| 03 | 15.0 | 30.0 | 52.0 | 151.0 |
| 04 | 18.0 | 148.0 | 51.0 | 31.0 |
| 05 | 148.0 | 47.0 | 31.0 | 22.0 |
| 06 | 81.0 | 33.0 | 102.0 | 32.0 |
| 07 | 104.0 | 11.0 | 123.0 | 10.0 |
| 08 | 201.0 | 0.0 | 44.0 | 3.0 |
| 09 | 5.0 | 1.0 | 241.0 | 1.0 |
| 10 | 1.0 | 6.0 | 84.0 | 157.0 |
| 11 | 1.0 | 12.0 | 2.0 | 233.0 |
| 12 | 5.0 | 232.0 | 7.0 | 4.0 |
| 13 | 246.0 | 0.0 | 1.0 | 1.0 |
| 14 | 205.0 | 2.0 | 35.0 | 6.0 |
| 15 | 11.0 | 2.0 | 231.0 | 4.0 |
| 16 | 5.0 | 3.0 | 236.0 | 4.0 |
| 17 | 21.0 | 50.0 | 25.0 | 152.0 |
| 18 | 2.0 | 197.0 | 17.0 | 32.0 |
| 19 | 201.0 | 10.0 | 19.0 | 18.0 |
| 20 | 37.0 | 40.0 | 96.0 | 75.0 |
| 21 | 18.0 | 105.0 | 87.0 | 38.0 |
| 22 | 24.0 | 131.0 | 51.0 | 42.0 |
| 23 | 20.0 | 50.0 | 26.0 | 152.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.177 | 0.121 | 0.613 | 0.089 |
| 02 | 0.331 | 0.105 | 0.411 | 0.153 |
| 03 | 0.06 | 0.121 | 0.21 | 0.609 |
| 04 | 0.073 | 0.597 | 0.206 | 0.125 |
| 05 | 0.597 | 0.19 | 0.125 | 0.089 |
| 06 | 0.327 | 0.133 | 0.411 | 0.129 |
| 07 | 0.419 | 0.044 | 0.496 | 0.04 |
| 08 | 0.81 | 0.0 | 0.177 | 0.012 |
| 09 | 0.02 | 0.004 | 0.972 | 0.004 |
| 10 | 0.004 | 0.024 | 0.339 | 0.633 |
| 11 | 0.004 | 0.048 | 0.008 | 0.94 |
| 12 | 0.02 | 0.935 | 0.028 | 0.016 |
| 13 | 0.992 | 0.0 | 0.004 | 0.004 |
| 14 | 0.827 | 0.008 | 0.141 | 0.024 |
| 15 | 0.044 | 0.008 | 0.931 | 0.016 |
| 16 | 0.02 | 0.012 | 0.952 | 0.016 |
| 17 | 0.085 | 0.202 | 0.101 | 0.613 |
| 18 | 0.008 | 0.794 | 0.069 | 0.129 |
| 19 | 0.81 | 0.04 | 0.077 | 0.073 |
| 20 | 0.149 | 0.161 | 0.387 | 0.302 |
| 21 | 0.073 | 0.423 | 0.351 | 0.153 |
| 22 | 0.097 | 0.528 | 0.206 | 0.169 |
| 23 | 0.081 | 0.202 | 0.105 | 0.613 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.334 | -0.703 | 0.884 | -0.997 |
| 02 | 0.274 | -0.839 | 0.489 | -0.476 |
| 03 | -1.353 | -0.703 | -0.172 | 0.877 |
| 04 | -1.185 | 0.857 | -0.191 | -0.672 |
| 05 | 0.857 | -0.27 | -0.672 | -0.997 |
| 06 | 0.262 | -0.612 | 0.489 | -0.641 |
| 07 | 0.508 | -1.633 | 0.674 | -1.717 |
| 08 | 1.161 | -3.828 | -0.334 | -2.672 |
| 09 | -2.296 | -3.283 | 1.341 | -3.283 |
| 10 | -3.283 | -2.151 | 0.298 | 0.916 |
| 11 | -3.283 | -1.555 | -2.932 | 1.308 |
| 12 | -2.296 | 1.304 | -2.023 | -2.467 |
| 13 | 1.362 | -3.828 | -3.283 | -3.283 |
| 14 | 1.181 | -2.932 | -0.555 | -2.151 |
| 15 | -1.633 | -2.932 | 1.299 | -2.467 |
| 16 | -2.296 | -2.672 | 1.321 | -2.467 |
| 17 | -1.041 | -0.21 | -0.877 | 0.884 |
| 18 | -2.932 | 1.141 | -1.238 | -0.641 |
| 19 | 1.161 | -1.717 | -1.135 | -1.185 |
| 20 | -0.502 | -0.426 | 0.429 | 0.187 |
| 21 | -1.185 | 0.518 | 0.333 | -0.476 |
| 22 | -0.915 | 0.737 | -0.191 | -0.379 |
| 23 | -1.087 | -0.21 | -0.839 | 0.884 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.51141 |
| 0.0005 | 2.77676 |
| 0.0001 | 5.46276 |