MotifRXRG.H12INVITRO.0.P.B
Gene (human)RXRG
(GeneCards)
Gene synonyms (human)NR2B3
Gene (mouse)Rxrg
Gene synonyms (mouse)Nr2b3
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length10
ConsensusRRGGTCAdRR
GC content54.56%
Information content (bits; total / per base)10.723 / 1.072
Data sourcesChIP-Seq
Aligned words103

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 3 (14) 0.713 0.948 0.618 0.875 0.672 0.953 2.338 4.276 32.456 200.444

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 5 experiments median 0.985 0.973 0.977 0.962 0.882 0.881
best 0.989 0.981 0.979 0.968 0.965 0.946
Methyl HT-SELEX, 1 experiments median 0.983 0.971 0.978 0.963 0.965 0.946
best 0.983 0.971 0.978 0.963 0.965 0.946
Non-Methyl HT-SELEX, 4 experiments median 0.986 0.976 0.972 0.959 0.855 0.859
best 0.989 0.981 0.979 0.968 0.948 0.93

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.667 0.324 0.752 0.529
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familyRXR-related receptors {2.1.3} (TFClass)
TF subfamilyRXR (NR2B) {2.1.3.1} (TFClass)
TFClass IDTFClass: 2.1.3.1.3
HGNCHGNC:10479
MGIMGI:98216
EntrezGene (human)GeneID:6258
(SSTAR profile)
EntrezGene (mouse)GeneID:20183
(SSTAR profile)
UniProt ID (human)RXRG_HUMAN
UniProt ID (mouse)RXRG_MOUSE
UniProt AC (human)P48443
(TFClass)
UniProt AC (mouse)P28705
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 3 mouse
HT-SELEX 4
Methyl-HT-SELEX 1
PCM
ACGT
0147.08.043.05.0
0270.02.024.07.0
031.01.0100.01.0
041.01.072.029.0
051.02.08.092.0
060.0101.02.00.0
07100.02.00.01.0
0848.04.037.014.0
0913.010.072.08.0
1019.03.070.011.0
PFM
ACGT
010.4560.0780.4170.049
020.680.0190.2330.068
030.010.010.9710.01
040.010.010.6990.282
050.010.0190.0780.893
060.00.9810.0190.0
070.9710.0190.00.01
080.4660.0390.3590.136
090.1260.0970.6990.078
100.1840.0290.680.107
PWM
ACGT
010.582-1.0780.495-1.475
020.972-2.142-0.067-1.193
03-2.523-2.5231.324-2.523
04-2.523-2.5231.00.114
05-2.523-2.142-1.0781.242
06-3.1451.334-2.142-3.145
071.324-2.142-3.145-2.523
080.603-1.6520.349-0.574
09-0.642-0.881.0-1.078
10-0.289-1.8670.972-0.794
Standard thresholds
P-value Threshold
0.001 4.755535
0.0005 5.601835
0.0001 7.280155