MotifRX.H12INVIVO.0.SM.D
Gene (human)RAX
(GeneCards)
Gene synonyms (human)RX
Gene (mouse)Rax
Gene synonyms (mouse)Rx
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length16
ConsensusnbnRnYTAATTAvbvn
GC content32.56%
Information content (bits; total / per base)12.76 / 0.797
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9998

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.798 0.784 0.766 0.759 0.748 0.742
best 0.99 0.983 0.985 0.975 0.974 0.961
Methyl HT-SELEX, 1 experiments median 0.987 0.977 0.981 0.968 0.971 0.955
best 0.987 0.977 0.981 0.968 0.971 0.955
Non-Methyl HT-SELEX, 3 experiments median 0.609 0.591 0.552 0.55 0.525 0.53
best 0.99 0.983 0.985 0.975 0.974 0.961
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyRAX {3.1.3.22} (TFClass)
TFClass IDTFClass: 3.1.3.22.1
HGNCHGNC:18662
MGIMGI:109632
EntrezGene (human)GeneID:30062
(SSTAR profile)
EntrezGene (mouse)GeneID:19434
(SSTAR profile)
UniProt ID (human)RX_HUMAN
UniProt ID (mouse)RX_MOUSE
UniProt AC (human)Q9Y2V3
(TFClass)
UniProt AC (mouse)O35602
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
013044.02452.01957.02545.0
021308.52020.51397.55271.5
032857.02231.01534.03376.0
046050.01523.01990.0435.0
053781.01613.02118.02486.0
0617.04227.01193.04561.0
0739.02237.0133.07589.0
089875.026.097.00.0
099994.02.02.00.0
100.01.00.09997.0
110.043.00.09955.0
129649.04.0333.012.0
132447.01949.04707.0895.0
14576.04470.02516.02436.0
152378.02171.04002.01447.0
162480.252678.252459.252380.25
PFM
ACGT
010.3040.2450.1960.255
020.1310.2020.140.527
030.2860.2230.1530.338
040.6050.1520.1990.044
050.3780.1610.2120.249
060.0020.4230.1190.456
070.0040.2240.0130.759
080.9880.0030.010.0
091.00.00.00.0
100.00.00.01.0
110.00.0040.00.996
120.9650.00.0330.001
130.2450.1950.4710.09
140.0580.4470.2520.244
150.2380.2170.40.145
160.2480.2680.2460.238
PWM
ACGT
010.197-0.019-0.2440.018
02-0.646-0.213-0.5810.746
030.134-0.114-0.4880.3
040.883-0.495-0.228-1.744
050.414-0.437-0.165-0.005
06-4.8650.525-0.7390.601
07-4.104-0.111-2.9171.11
081.373-4.482-3.227-6.991
091.385-6.366-6.366-6.991
10-6.991-6.63-6.9911.386
11-6.991-4.011-6.9911.381
121.35-5.984-2.01-5.164
13-0.021-0.2490.633-1.025
14-1.4650.5810.007-0.026
15-0.05-0.1410.47-0.546
16-0.0080.069-0.016-0.049
Standard thresholds
P-value Threshold
0.001 2.75356
0.0005 4.34361
0.0001 7.51461