MotifRORA.H12INVIVO.0.P.C
Gene (human)RORA
(GeneCards)
Gene synonyms (human)NR1F1, RZRA
Gene (mouse)Rora
Gene synonyms (mouse)Nr1f1, Rzra
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length13
ConsensusMWndRGGbCAddK
GC content51.59%
Information content (bits; total / per base)9.768 / 0.751
Data sourcesChIP-Seq
Aligned words898

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (5) 0.739 0.758 0.633 0.657 0.725 0.744 2.3 2.418 51.678 66.538
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familyThyroid hormone receptor-related {2.1.2} (TFClass)
TF subfamilyROR (NR1F) {2.1.2.6} (TFClass)
TFClass IDTFClass: 2.1.2.6.1
HGNCHGNC:10258
MGIMGI:104661
EntrezGene (human)GeneID:6095
(SSTAR profile)
EntrezGene (mouse)GeneID:19883
(SSTAR profile)
UniProt ID (human)RORA_HUMAN
UniProt ID (mouse)RORA_MOUSE
UniProt AC (human)P35398
(TFClass)
UniProt AC (mouse)P51448
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01517.0249.043.089.0
02461.076.060.0301.0
03136.0280.0284.0198.0
04114.0104.0143.0537.0
05496.010.0379.013.0
0626.04.0824.044.0
0715.017.0846.020.0
08106.0136.0114.0542.0
0914.0845.019.020.0
10869.013.03.013.0
11263.0126.0358.0151.0
12224.067.0392.0215.0
13133.085.0546.0134.0
PFM
ACGT
010.5760.2770.0480.099
020.5130.0850.0670.335
030.1510.3120.3160.22
040.1270.1160.1590.598
050.5520.0110.4220.014
060.0290.0040.9180.049
070.0170.0190.9420.022
080.1180.1510.1270.604
090.0160.9410.0210.022
100.9680.0140.0030.014
110.2930.140.3990.168
120.2490.0750.4370.239
130.1480.0950.6080.149
PWM
ACGT
010.830.103-1.621-0.914
020.716-1.069-1.2990.291
03-0.4960.2190.234-0.125
04-0.67-0.761-0.4470.868
050.789-2.9620.521-2.734
06-2.1-3.6811.295-1.599
07-2.606-2.4931.321-2.344
08-0.742-0.496-0.670.877
09-2.6681.32-2.391-2.344
101.348-2.734-3.874-2.734
110.157-0.5720.464-0.393
12-0.002-1.1920.554-0.043
13-0.518-0.9590.884-0.511
Standard thresholds
P-value Threshold
0.001 4.78681
0.0005 5.63756
0.0001 7.32512