| Motif | RORA.H12INVIVO.0.P.C |
| Gene (human) | RORA (GeneCards) |
| Gene synonyms (human) | NR1F1, RZRA |
| Gene (mouse) | Rora |
| Gene synonyms (mouse) | Nr1f1, Rzra |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | C |
| Motif | RORA.H12INVIVO.0.P.C |
| Gene (human) | RORA (GeneCards) |
| Gene synonyms (human) | NR1F1, RZRA |
| Gene (mouse) | Rora |
| Gene synonyms (mouse) | Nr1f1, Rzra |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | C |
| Motif length | 13 |
| Consensus | MWndRGGbCAddK |
| GC content | 51.59% |
| Information content (bits; total / per base) | 9.768 / 0.751 |
| Data sources | ChIP-Seq |
| Aligned words | 898 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 1 (5) | 0.739 | 0.758 | 0.633 | 0.657 | 0.725 | 0.744 | 2.3 | 2.418 | 51.678 | 66.538 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | Thyroid hormone receptor-related {2.1.2} (TFClass) |
| TF subfamily | ROR (NR1F) {2.1.2.6} (TFClass) |
| TFClass ID | TFClass: 2.1.2.6.1 |
| HGNC | HGNC:10258 |
| MGI | MGI:104661 |
| EntrezGene (human) | GeneID:6095 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:19883 (SSTAR profile) |
| UniProt ID (human) | RORA_HUMAN |
| UniProt ID (mouse) | RORA_MOUSE |
| UniProt AC (human) | P35398 (TFClass) |
| UniProt AC (mouse) | P51448 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | RORA.H12INVIVO.0.P.C.pcm |
| PWM | RORA.H12INVIVO.0.P.C.pwm |
| PFM | RORA.H12INVIVO.0.P.C.pfm |
| Alignment | RORA.H12INVIVO.0.P.C.words.tsv |
| Threshold to P-value map | RORA.H12INVIVO.0.P.C.thr |
| Motif in other formats | |
| JASPAR format | RORA.H12INVIVO.0.P.C_jaspar_format.txt |
| MEME format | RORA.H12INVIVO.0.P.C_meme_format.meme |
| Transfac format | RORA.H12INVIVO.0.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 517.0 | 249.0 | 43.0 | 89.0 |
| 02 | 461.0 | 76.0 | 60.0 | 301.0 |
| 03 | 136.0 | 280.0 | 284.0 | 198.0 |
| 04 | 114.0 | 104.0 | 143.0 | 537.0 |
| 05 | 496.0 | 10.0 | 379.0 | 13.0 |
| 06 | 26.0 | 4.0 | 824.0 | 44.0 |
| 07 | 15.0 | 17.0 | 846.0 | 20.0 |
| 08 | 106.0 | 136.0 | 114.0 | 542.0 |
| 09 | 14.0 | 845.0 | 19.0 | 20.0 |
| 10 | 869.0 | 13.0 | 3.0 | 13.0 |
| 11 | 263.0 | 126.0 | 358.0 | 151.0 |
| 12 | 224.0 | 67.0 | 392.0 | 215.0 |
| 13 | 133.0 | 85.0 | 546.0 | 134.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.576 | 0.277 | 0.048 | 0.099 |
| 02 | 0.513 | 0.085 | 0.067 | 0.335 |
| 03 | 0.151 | 0.312 | 0.316 | 0.22 |
| 04 | 0.127 | 0.116 | 0.159 | 0.598 |
| 05 | 0.552 | 0.011 | 0.422 | 0.014 |
| 06 | 0.029 | 0.004 | 0.918 | 0.049 |
| 07 | 0.017 | 0.019 | 0.942 | 0.022 |
| 08 | 0.118 | 0.151 | 0.127 | 0.604 |
| 09 | 0.016 | 0.941 | 0.021 | 0.022 |
| 10 | 0.968 | 0.014 | 0.003 | 0.014 |
| 11 | 0.293 | 0.14 | 0.399 | 0.168 |
| 12 | 0.249 | 0.075 | 0.437 | 0.239 |
| 13 | 0.148 | 0.095 | 0.608 | 0.149 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.83 | 0.103 | -1.621 | -0.914 |
| 02 | 0.716 | -1.069 | -1.299 | 0.291 |
| 03 | -0.496 | 0.219 | 0.234 | -0.125 |
| 04 | -0.67 | -0.761 | -0.447 | 0.868 |
| 05 | 0.789 | -2.962 | 0.521 | -2.734 |
| 06 | -2.1 | -3.681 | 1.295 | -1.599 |
| 07 | -2.606 | -2.493 | 1.321 | -2.344 |
| 08 | -0.742 | -0.496 | -0.67 | 0.877 |
| 09 | -2.668 | 1.32 | -2.391 | -2.344 |
| 10 | 1.348 | -2.734 | -3.874 | -2.734 |
| 11 | 0.157 | -0.572 | 0.464 | -0.393 |
| 12 | -0.002 | -1.192 | 0.554 | -0.043 |
| 13 | -0.518 | -0.959 | 0.884 | -0.511 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.78681 |
| 0.0005 | 5.63756 |
| 0.0001 | 7.32512 |