MotifRHXF2.H12INVIVO.0.SM.D
Gene (human)RHOXF2
(GeneCards)
Gene synonyms (human)PEPP2, THG1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length11
ConsensusndGGATTAvbn
GC content43.33%
Information content (bits; total / per base)11.951 / 1.086
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9468

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.983 0.97 0.977 0.961 0.942 0.925
best 0.984 0.971 0.977 0.962 0.943 0.926
Methyl HT-SELEX, 1 experiments median 0.983 0.968 0.977 0.96 0.942 0.923
best 0.983 0.968 0.977 0.96 0.942 0.923
Non-Methyl HT-SELEX, 1 experiments median 0.984 0.971 0.977 0.962 0.943 0.926
best 0.984 0.971 0.977 0.962 0.943 0.926
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyRHOX {3.1.3.23} (TFClass)
TFClass IDTFClass: 3.1.3.23.2
HGNCHGNC:30011
MGI
EntrezGene (human)GeneID:84528
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)RHXF2_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q9BQY4
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012952.51720.53090.51704.5
022091.01578.03849.01950.0
03491.0198.08526.0253.0
040.00.09467.01.0
059460.08.00.00.0
060.00.00.09468.0
070.00.00.09468.0
089421.07.03.037.0
094386.01256.03061.0765.0
10830.253462.253193.251982.25
111760.02450.03254.02004.0
PFM
ACGT
010.3120.1820.3260.18
020.2210.1670.4070.206
030.0520.0210.9010.027
040.00.01.00.0
050.9990.0010.00.0
060.00.00.01.0
070.00.00.01.0
080.9950.0010.00.004
090.4630.1330.3230.081
100.0880.3660.3370.209
110.1860.2590.3440.212
PWM
ACGT
010.221-0.3190.266-0.328
02-0.124-0.4050.486-0.194
03-1.569-2.4711.281-2.228
04-6.942-6.9421.385-6.58
051.385-5.439-6.942-6.942
06-6.942-6.942-6.9421.386
07-6.942-6.942-6.9421.386
081.381-5.542-6.105-4.099
090.616-0.6330.257-1.127
10-1.0460.380.299-0.177
11-0.2960.0340.318-0.166
Standard thresholds
P-value Threshold
0.001 2.83545
0.0005 4.80814
0.0001 7.962245