| Motif | RHXF2.H12INVIVO.0.SM.D |
| Gene (human) | RHOXF2 (GeneCards) |
| Gene synonyms (human) | PEPP2, THG1 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | RHXF2.H12INVIVO.0.SM.D |
| Gene (human) | RHOXF2 (GeneCards) |
| Gene synonyms (human) | PEPP2, THG1 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | ndGGATTAvbn |
| GC content | 43.33% |
| Information content (bits; total / per base) | 11.951 / 1.086 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9468 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.983 | 0.97 | 0.977 | 0.961 | 0.942 | 0.925 |
| best | 0.984 | 0.971 | 0.977 | 0.962 | 0.943 | 0.926 | |
| Methyl HT-SELEX, 1 experiments | median | 0.983 | 0.968 | 0.977 | 0.96 | 0.942 | 0.923 |
| best | 0.983 | 0.968 | 0.977 | 0.96 | 0.942 | 0.923 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.984 | 0.971 | 0.977 | 0.962 | 0.943 | 0.926 |
| best | 0.984 | 0.971 | 0.977 | 0.962 | 0.943 | 0.926 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | Paired-related HD {3.1.3} (TFClass) |
| TF subfamily | RHOX {3.1.3.23} (TFClass) |
| TFClass ID | TFClass: 3.1.3.23.2 |
| HGNC | HGNC:30011 |
| MGI | |
| EntrezGene (human) | GeneID:84528 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | RHXF2_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q9BQY4 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | RHXF2.H12INVIVO.0.SM.D.pcm |
| PWM | RHXF2.H12INVIVO.0.SM.D.pwm |
| PFM | RHXF2.H12INVIVO.0.SM.D.pfm |
| Alignment | RHXF2.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | RHXF2.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | RHXF2.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | RHXF2.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | RHXF2.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2952.5 | 1720.5 | 3090.5 | 1704.5 |
| 02 | 2091.0 | 1578.0 | 3849.0 | 1950.0 |
| 03 | 491.0 | 198.0 | 8526.0 | 253.0 |
| 04 | 0.0 | 0.0 | 9467.0 | 1.0 |
| 05 | 9460.0 | 8.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 9468.0 |
| 07 | 0.0 | 0.0 | 0.0 | 9468.0 |
| 08 | 9421.0 | 7.0 | 3.0 | 37.0 |
| 09 | 4386.0 | 1256.0 | 3061.0 | 765.0 |
| 10 | 830.25 | 3462.25 | 3193.25 | 1982.25 |
| 11 | 1760.0 | 2450.0 | 3254.0 | 2004.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.312 | 0.182 | 0.326 | 0.18 |
| 02 | 0.221 | 0.167 | 0.407 | 0.206 |
| 03 | 0.052 | 0.021 | 0.901 | 0.027 |
| 04 | 0.0 | 0.0 | 1.0 | 0.0 |
| 05 | 0.999 | 0.001 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.995 | 0.001 | 0.0 | 0.004 |
| 09 | 0.463 | 0.133 | 0.323 | 0.081 |
| 10 | 0.088 | 0.366 | 0.337 | 0.209 |
| 11 | 0.186 | 0.259 | 0.344 | 0.212 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.221 | -0.319 | 0.266 | -0.328 |
| 02 | -0.124 | -0.405 | 0.486 | -0.194 |
| 03 | -1.569 | -2.471 | 1.281 | -2.228 |
| 04 | -6.942 | -6.942 | 1.385 | -6.58 |
| 05 | 1.385 | -5.439 | -6.942 | -6.942 |
| 06 | -6.942 | -6.942 | -6.942 | 1.386 |
| 07 | -6.942 | -6.942 | -6.942 | 1.386 |
| 08 | 1.381 | -5.542 | -6.105 | -4.099 |
| 09 | 0.616 | -0.633 | 0.257 | -1.127 |
| 10 | -1.046 | 0.38 | 0.299 | -0.177 |
| 11 | -0.296 | 0.034 | 0.318 | -0.166 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.83545 |
| 0.0005 | 4.80814 |
| 0.0001 | 7.962245 |