| Motif | RHXF1.H12INVIVO.0.SM.D |
| Gene (human) | RHOXF1 (GeneCards) |
| Gene synonyms (human) | OTEX, PEPP1 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | RHXF1.H12INVIVO.0.SM.D |
| Gene (human) | RHOXF1 (GeneCards) |
| Gene synonyms (human) | OTEX, PEPP1 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 13 |
| Consensus | nvnGGATYAdvnn |
| GC content | 48.43% |
| Information content (bits; total / per base) | 9.594 / 0.738 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9337 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.89 | 0.847 | 0.841 | 0.802 | 0.779 | 0.751 |
| best | 0.975 | 0.957 | 0.957 | 0.932 | 0.92 | 0.892 | |
| Methyl HT-SELEX, 1 experiments | median | 0.973 | 0.954 | 0.957 | 0.932 | 0.92 | 0.892 |
| best | 0.973 | 0.954 | 0.957 | 0.932 | 0.92 | 0.892 | |
| Non-Methyl HT-SELEX, 5 experiments | median | 0.818 | 0.758 | 0.74 | 0.694 | 0.66 | 0.637 |
| best | 0.975 | 0.957 | 0.954 | 0.93 | 0.901 | 0.876 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | Paired-related HD {3.1.3} (TFClass) |
| TF subfamily | RHOX {3.1.3.23} (TFClass) |
| TFClass ID | TFClass: 3.1.3.23.1 |
| HGNC | HGNC:29993 |
| MGI | |
| EntrezGene (human) | GeneID:158800 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | RHXF1_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q8NHV9 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 5 |
| Methyl-HT-SELEX | 1 |
| PCM | RHXF1.H12INVIVO.0.SM.D.pcm |
| PWM | RHXF1.H12INVIVO.0.SM.D.pwm |
| PFM | RHXF1.H12INVIVO.0.SM.D.pfm |
| Alignment | RHXF1.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | RHXF1.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | RHXF1.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | RHXF1.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | RHXF1.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2833.25 | 2930.25 | 1642.25 | 1931.25 |
| 02 | 3425.75 | 1965.75 | 2672.75 | 1272.75 |
| 03 | 1644.0 | 1785.0 | 3164.0 | 2744.0 |
| 04 | 97.0 | 5.0 | 9186.0 | 49.0 |
| 05 | 0.0 | 0.0 | 9334.0 | 3.0 |
| 06 | 7110.0 | 2227.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 9337.0 |
| 08 | 761.0 | 3227.0 | 1.0 | 5348.0 |
| 09 | 8008.0 | 318.0 | 62.0 | 949.0 |
| 10 | 3580.0 | 1275.0 | 1936.0 | 2546.0 |
| 11 | 1662.0 | 4424.0 | 2174.0 | 1077.0 |
| 12 | 1537.75 | 3603.75 | 2205.75 | 1989.75 |
| 13 | 2135.25 | 2310.25 | 2340.25 | 2551.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.303 | 0.314 | 0.176 | 0.207 |
| 02 | 0.367 | 0.211 | 0.286 | 0.136 |
| 03 | 0.176 | 0.191 | 0.339 | 0.294 |
| 04 | 0.01 | 0.001 | 0.984 | 0.005 |
| 05 | 0.0 | 0.0 | 1.0 | 0.0 |
| 06 | 0.761 | 0.239 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.082 | 0.346 | 0.0 | 0.573 |
| 09 | 0.858 | 0.034 | 0.007 | 0.102 |
| 10 | 0.383 | 0.137 | 0.207 | 0.273 |
| 11 | 0.178 | 0.474 | 0.233 | 0.115 |
| 12 | 0.165 | 0.386 | 0.236 | 0.213 |
| 13 | 0.229 | 0.247 | 0.251 | 0.273 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.194 | 0.227 | -0.351 | -0.189 |
| 02 | 0.383 | -0.172 | 0.135 | -0.606 |
| 03 | -0.35 | -0.268 | 0.304 | 0.162 |
| 04 | -3.158 | -5.771 | 1.369 | -3.819 |
| 05 | -6.93 | -6.93 | 1.385 | -6.091 |
| 06 | 1.113 | -0.047 | -6.93 | -6.93 |
| 07 | -6.93 | -6.93 | -6.93 | 1.386 |
| 08 | -1.119 | 0.324 | -6.567 | 0.828 |
| 09 | 1.232 | -1.987 | -3.593 | -0.899 |
| 10 | 0.427 | -0.604 | -0.187 | 0.087 |
| 11 | -0.339 | 0.639 | -0.071 | -0.772 |
| 12 | -0.417 | 0.434 | -0.057 | -0.16 |
| 13 | -0.089 | -0.01 | 0.003 | 0.089 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.24666 |
| 0.0005 | 6.17281 |
| 0.0001 | 7.49972 |