MotifRHXF1.H12INVITRO.0.SM.B
Gene (human)RHOXF1
(GeneCards)
Gene synonyms (human)OTEX, PEPP1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length13
ConsensusnvnGGATYAdvnn
GC content48.43%
Information content (bits; total / per base)9.594 / 0.738
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9337

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.89 0.847 0.841 0.802 0.779 0.751
best 0.975 0.957 0.957 0.932 0.92 0.892
Methyl HT-SELEX, 1 experiments median 0.973 0.954 0.957 0.932 0.92 0.892
best 0.973 0.954 0.957 0.932 0.92 0.892
Non-Methyl HT-SELEX, 5 experiments median 0.818 0.758 0.74 0.694 0.66 0.637
best 0.975 0.957 0.954 0.93 0.901 0.876
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyRHOX {3.1.3.23} (TFClass)
TFClass IDTFClass: 3.1.3.23.1
HGNCHGNC:29993
MGI
EntrezGene (human)GeneID:158800
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)RHXF1_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8NHV9
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 1
PCM
ACGT
012833.252930.251642.251931.25
023425.751965.752672.751272.75
031644.01785.03164.02744.0
0497.05.09186.049.0
050.00.09334.03.0
067110.02227.00.00.0
070.00.00.09337.0
08761.03227.01.05348.0
098008.0318.062.0949.0
103580.01275.01936.02546.0
111662.04424.02174.01077.0
121537.753603.752205.751989.75
132135.252310.252340.252551.25
PFM
ACGT
010.3030.3140.1760.207
020.3670.2110.2860.136
030.1760.1910.3390.294
040.010.0010.9840.005
050.00.01.00.0
060.7610.2390.00.0
070.00.00.01.0
080.0820.3460.00.573
090.8580.0340.0070.102
100.3830.1370.2070.273
110.1780.4740.2330.115
120.1650.3860.2360.213
130.2290.2470.2510.273
PWM
ACGT
010.1940.227-0.351-0.189
020.383-0.1720.135-0.606
03-0.35-0.2680.3040.162
04-3.158-5.7711.369-3.819
05-6.93-6.931.385-6.091
061.113-0.047-6.93-6.93
07-6.93-6.93-6.931.386
08-1.1190.324-6.5670.828
091.232-1.987-3.593-0.899
100.427-0.604-0.1870.087
11-0.3390.639-0.071-0.772
12-0.4170.434-0.057-0.16
13-0.089-0.010.0030.089
Standard thresholds
P-value Threshold
0.001 5.24666
0.0005 6.17281
0.0001 7.49972