| Motif | RFX7.H12RSNP.0.SM.D |
| Gene (human) | RFX7 (GeneCards) |
| Gene synonyms (human) | RFXDC2 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | RFX7.H12RSNP.0.SM.D |
| Gene (human) | RFX7 (GeneCards) |
| Gene synonyms (human) | RFXDC2 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | nbGTYRYbdnvn |
| GC content | 55.27% |
| Information content (bits; total / per base) | 7.291 / 0.608 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 5807 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.951 | 0.927 | 0.899 | 0.866 | 0.819 | 0.791 |
| best | 0.954 | 0.933 | 0.9 | 0.868 | 0.828 | 0.796 | |
| Methyl HT-SELEX, 1 experiments | median | 0.954 | 0.933 | 0.898 | 0.868 | 0.81 | 0.786 |
| best | 0.954 | 0.933 | 0.898 | 0.868 | 0.81 | 0.786 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.947 | 0.92 | 0.9 | 0.864 | 0.828 | 0.796 |
| best | 0.947 | 0.92 | 0.9 | 0.864 | 0.828 | 0.796 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | RFX {3.3.3} (TFClass) |
| TF subfamily | {3.3.3.0} (TFClass) |
| TFClass ID | TFClass: 3.3.3.0.7 |
| HGNC | HGNC:25777 |
| MGI | |
| EntrezGene (human) | GeneID:64864 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | RFX7_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q2KHR2 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | RFX7.H12RSNP.0.SM.D.pcm |
| PWM | RFX7.H12RSNP.0.SM.D.pwm |
| PFM | RFX7.H12RSNP.0.SM.D.pfm |
| Alignment | RFX7.H12RSNP.0.SM.D.words.tsv |
| Threshold to P-value map | RFX7.H12RSNP.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | RFX7.H12RSNP.0.SM.D_jaspar_format.txt |
| MEME format | RFX7.H12RSNP.0.SM.D_meme_format.meme |
| Transfac format | RFX7.H12RSNP.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1334.25 | 1462.25 | 1758.25 | 1252.25 |
| 02 | 459.75 | 3004.75 | 1100.75 | 1241.75 |
| 03 | 95.0 | 1.0 | 5710.0 | 1.0 |
| 04 | 119.0 | 0.0 | 0.0 | 5688.0 |
| 05 | 735.0 | 818.0 | 33.0 | 4221.0 |
| 06 | 1622.0 | 69.0 | 3794.0 | 322.0 |
| 07 | 281.0 | 3990.0 | 558.0 | 978.0 |
| 08 | 380.0 | 2022.0 | 1288.0 | 2117.0 |
| 09 | 2809.0 | 476.0 | 1700.0 | 822.0 |
| 10 | 921.0 | 1580.0 | 1146.0 | 2160.0 |
| 11 | 827.0 | 1114.0 | 3358.0 | 508.0 |
| 12 | 931.75 | 1851.75 | 1681.75 | 1341.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.23 | 0.252 | 0.303 | 0.216 |
| 02 | 0.079 | 0.517 | 0.19 | 0.214 |
| 03 | 0.016 | 0.0 | 0.983 | 0.0 |
| 04 | 0.02 | 0.0 | 0.0 | 0.98 |
| 05 | 0.127 | 0.141 | 0.006 | 0.727 |
| 06 | 0.279 | 0.012 | 0.653 | 0.055 |
| 07 | 0.048 | 0.687 | 0.096 | 0.168 |
| 08 | 0.065 | 0.348 | 0.222 | 0.365 |
| 09 | 0.484 | 0.082 | 0.293 | 0.142 |
| 10 | 0.159 | 0.272 | 0.197 | 0.372 |
| 11 | 0.142 | 0.192 | 0.578 | 0.087 |
| 12 | 0.16 | 0.319 | 0.29 | 0.231 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.084 | 0.007 | 0.191 | -0.148 |
| 02 | -1.147 | 0.727 | -0.276 | -0.156 |
| 03 | -2.706 | -6.129 | 1.368 | -6.129 |
| 04 | -2.485 | -6.509 | -6.509 | 1.364 |
| 05 | -0.679 | -0.573 | -3.722 | 1.066 |
| 06 | 0.111 | -3.017 | 0.96 | -1.501 |
| 07 | -1.636 | 1.01 | -0.954 | -0.394 |
| 08 | -1.336 | 0.331 | -0.119 | 0.377 |
| 09 | 0.659 | -1.112 | 0.158 | -0.568 |
| 10 | -0.454 | 0.085 | -0.236 | 0.397 |
| 11 | -0.562 | -0.264 | 0.838 | -1.047 |
| 12 | -0.443 | 0.243 | 0.147 | -0.079 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.199365 |
| 0.0005 | 5.77786 |
| 0.0001 | 6.883545 |