MotifRFX7.H12INVITRO.0.SM.B
Gene (human)RFX7
(GeneCards)
Gene synonyms (human)RFXDC2
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length12
ConsensusnbGTYRYbdnvn
GC content55.27%
Information content (bits; total / per base)7.291 / 0.608
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words5807

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.951 0.927 0.899 0.866 0.819 0.791
best 0.954 0.933 0.9 0.868 0.828 0.796
Methyl HT-SELEX, 1 experiments median 0.954 0.933 0.898 0.868 0.81 0.786
best 0.954 0.933 0.898 0.868 0.81 0.786
Non-Methyl HT-SELEX, 1 experiments median 0.947 0.92 0.9 0.864 0.828 0.796
best 0.947 0.92 0.9 0.864 0.828 0.796
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyRFX {3.3.3} (TFClass)
TF subfamily {3.3.3.0} (TFClass)
TFClass IDTFClass: 3.3.3.0.7
HGNCHGNC:25777
MGI
EntrezGene (human)GeneID:64864
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)RFX7_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q2KHR2
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011334.251462.251758.251252.25
02459.753004.751100.751241.75
0395.01.05710.01.0
04119.00.00.05688.0
05735.0818.033.04221.0
061622.069.03794.0322.0
07281.03990.0558.0978.0
08380.02022.01288.02117.0
092809.0476.01700.0822.0
10921.01580.01146.02160.0
11827.01114.03358.0508.0
12931.751851.751681.751341.75
PFM
ACGT
010.230.2520.3030.216
020.0790.5170.190.214
030.0160.00.9830.0
040.020.00.00.98
050.1270.1410.0060.727
060.2790.0120.6530.055
070.0480.6870.0960.168
080.0650.3480.2220.365
090.4840.0820.2930.142
100.1590.2720.1970.372
110.1420.1920.5780.087
120.160.3190.290.231
PWM
ACGT
01-0.0840.0070.191-0.148
02-1.1470.727-0.276-0.156
03-2.706-6.1291.368-6.129
04-2.485-6.509-6.5091.364
05-0.679-0.573-3.7221.066
060.111-3.0170.96-1.501
07-1.6361.01-0.954-0.394
08-1.3360.331-0.1190.377
090.659-1.1120.158-0.568
10-0.4540.085-0.2360.397
11-0.562-0.2640.838-1.047
12-0.4430.2430.147-0.079
Standard thresholds
P-value Threshold
0.001 5.199365
0.0005 5.77786
0.0001 6.883545