| Motif | RFX6.H12INVITRO.0.P.D |
| Gene (human) | RFX6 (GeneCards) |
| Gene synonyms (human) | RFXDC1 |
| Gene (mouse) | Rfx6 |
| Gene synonyms (mouse) | Rfxdc1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | RFX6.H12INVITRO.0.P.D |
| Gene (human) | RFX6 (GeneCards) |
| Gene synonyms (human) | RFXDC1 |
| Gene (mouse) | Rfx6 |
| Gene synonyms (mouse) | Rfxdc1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | bdGTTKCYWKG |
| GC content | 58.89% |
| Information content (bits; total / per base) | 11.675 / 1.061 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 1 (6) | 0.884 | 0.899 | 0.78 | 0.811 | 0.852 | 0.864 | 2.95 | 3.065 | 125.4 | 139.347 |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.755 | 0.395 | 0.736 | 0.515 |
| batch 2 | 0.788 | 0.68 | 0.836 | 0.6 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | RFX {3.3.3} (TFClass) |
| TF subfamily | {3.3.3.0} (TFClass) |
| TFClass ID | TFClass: 3.3.3.0.6 |
| HGNC | HGNC:21478 |
| MGI | MGI:2445208 |
| EntrezGene (human) | GeneID:222546 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:320995 (SSTAR profile) |
| UniProt ID (human) | RFX6_HUMAN |
| UniProt ID (mouse) | RFX6_MOUSE |
| UniProt AC (human) | Q8HWS3 (TFClass) |
| UniProt AC (mouse) | Q8C7R7 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | RFX6.H12INVITRO.0.P.D.pcm |
| PWM | RFX6.H12INVITRO.0.P.D.pwm |
| PFM | RFX6.H12INVITRO.0.P.D.pfm |
| Alignment | RFX6.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | RFX6.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | RFX6.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | RFX6.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | RFX6.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 106.0 | 417.0 | 224.0 | 253.0 |
| 02 | 107.0 | 76.0 | 417.0 | 400.0 |
| 03 | 2.0 | 3.0 | 994.0 | 1.0 |
| 04 | 20.0 | 110.0 | 8.0 | 862.0 |
| 05 | 47.0 | 25.0 | 3.0 | 925.0 |
| 06 | 82.0 | 38.0 | 752.0 | 128.0 |
| 07 | 0.0 | 969.0 | 3.0 | 28.0 |
| 08 | 3.0 | 615.0 | 2.0 | 380.0 |
| 09 | 586.0 | 54.0 | 175.0 | 185.0 |
| 10 | 177.0 | 8.0 | 604.0 | 211.0 |
| 11 | 13.0 | 4.0 | 977.0 | 6.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.106 | 0.417 | 0.224 | 0.253 |
| 02 | 0.107 | 0.076 | 0.417 | 0.4 |
| 03 | 0.002 | 0.003 | 0.994 | 0.001 |
| 04 | 0.02 | 0.11 | 0.008 | 0.862 |
| 05 | 0.047 | 0.025 | 0.003 | 0.925 |
| 06 | 0.082 | 0.038 | 0.752 | 0.128 |
| 07 | 0.0 | 0.969 | 0.003 | 0.028 |
| 08 | 0.003 | 0.615 | 0.002 | 0.38 |
| 09 | 0.586 | 0.054 | 0.175 | 0.185 |
| 10 | 0.177 | 0.008 | 0.604 | 0.211 |
| 11 | 0.013 | 0.004 | 0.977 | 0.006 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.849 | 0.509 | -0.109 | 0.012 |
| 02 | -0.84 | -1.175 | 0.509 | 0.467 |
| 03 | -4.213 | -3.975 | 1.375 | -4.525 |
| 04 | -2.45 | -0.812 | -3.253 | 1.233 |
| 05 | -1.642 | -2.243 | -3.975 | 1.303 |
| 06 | -1.101 | -1.846 | 1.097 | -0.663 |
| 07 | -4.982 | 1.35 | -3.975 | -2.136 |
| 08 | -3.975 | 0.896 | -4.213 | 0.416 |
| 09 | 0.848 | -1.508 | -0.354 | -0.299 |
| 10 | -0.342 | -3.253 | 0.878 | -0.168 |
| 11 | -2.839 | -3.783 | 1.358 | -3.484 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.19544 |
| 0.0005 | 5.25181 |
| 0.0001 | 7.38275 |