MotifRFX6.H12INVITRO.0.P.D
Gene (human)RFX6
(GeneCards)
Gene synonyms (human)RFXDC1
Gene (mouse)Rfx6
Gene synonyms (mouse)Rfxdc1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length11
ConsensusbdGTTKCYWKG
GC content58.89%
Information content (bits; total / per base)11.675 / 1.061
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (6) 0.884 0.899 0.78 0.811 0.852 0.864 2.95 3.065 125.4 139.347

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.755 0.395 0.736 0.515
batch 2 0.788 0.68 0.836 0.6
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyRFX {3.3.3} (TFClass)
TF subfamily {3.3.3.0} (TFClass)
TFClass IDTFClass: 3.3.3.0.6
HGNCHGNC:21478
MGIMGI:2445208
EntrezGene (human)GeneID:222546
(SSTAR profile)
EntrezGene (mouse)GeneID:320995
(SSTAR profile)
UniProt ID (human)RFX6_HUMAN
UniProt ID (mouse)RFX6_MOUSE
UniProt AC (human)Q8HWS3
(TFClass)
UniProt AC (mouse)Q8C7R7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01106.0417.0224.0253.0
02107.076.0417.0400.0
032.03.0994.01.0
0420.0110.08.0862.0
0547.025.03.0925.0
0682.038.0752.0128.0
070.0969.03.028.0
083.0615.02.0380.0
09586.054.0175.0185.0
10177.08.0604.0211.0
1113.04.0977.06.0
PFM
ACGT
010.1060.4170.2240.253
020.1070.0760.4170.4
030.0020.0030.9940.001
040.020.110.0080.862
050.0470.0250.0030.925
060.0820.0380.7520.128
070.00.9690.0030.028
080.0030.6150.0020.38
090.5860.0540.1750.185
100.1770.0080.6040.211
110.0130.0040.9770.006
PWM
ACGT
01-0.8490.509-0.1090.012
02-0.84-1.1750.5090.467
03-4.213-3.9751.375-4.525
04-2.45-0.812-3.2531.233
05-1.642-2.243-3.9751.303
06-1.101-1.8461.097-0.663
07-4.9821.35-3.975-2.136
08-3.9750.896-4.2130.416
090.848-1.508-0.354-0.299
10-0.342-3.2530.878-0.168
11-2.839-3.7831.358-3.484
Standard thresholds
P-value Threshold
0.001 4.19544
0.0005 5.25181
0.0001 7.38275