MotifRFX4.H12CORE.0.SM.B
Gene (human)RFX4
(GeneCards)
Gene synonyms (human)
Gene (mouse)Rfx4
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length16
ConsensusbGTTGCCAKGRhdMYv
GC content52.99%
Information content (bits; total / per base)14.403 / 0.9
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9672

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 5 experiments median 0.989 0.987 0.855 0.857 0.705 0.728
best 1.0 1.0 1.0 1.0 0.997 0.997
Methyl HT-SELEX, 2 experiments median 0.994 0.993 0.926 0.928 0.843 0.859
best 1.0 1.0 1.0 1.0 0.997 0.997
Non-Methyl HT-SELEX, 3 experiments median 0.988 0.986 0.855 0.857 0.705 0.728
best 1.0 1.0 1.0 1.0 0.997 0.997
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classFork head/winged helix factors {3.3} (TFClass)
TF familyRFX {3.3.3} (TFClass)
TF subfamily {3.3.3.0} (TFClass)
TFClass IDTFClass: 3.3.3.0.4
HGNCHGNC:9985
MGIMGI:1918387
EntrezGene (human)GeneID:5992
(SSTAR profile)
EntrezGene (mouse)GeneID:71137
(SSTAR profile)
UniProt ID (human)RFX4_HUMAN
UniProt ID (mouse)RFX4_MOUSE
UniProt AC (human)Q33E94
(TFClass)
UniProt AC (mouse)Q7TNK1
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 2
PCM
ACGT
011122.53602.53159.51787.5
02160.0109.09323.080.0
0380.0371.092.09129.0
04994.0223.068.08387.0
051644.029.07756.0243.0
065.08544.023.01100.0
0719.07207.090.02356.0
088345.0239.0461.0627.0
09871.0373.01381.07047.0
10739.0161.08642.0130.0
111582.01235.06384.0471.0
122241.02772.0762.03897.0
134871.0420.01794.02587.0
146492.02009.0542.0629.0
15735.56855.5925.51155.5
161768.52984.53469.51449.5
PFM
ACGT
010.1160.3720.3270.185
020.0170.0110.9640.008
030.0080.0380.010.944
040.1030.0230.0070.867
050.170.0030.8020.025
060.0010.8830.0020.114
070.0020.7450.0090.244
080.8630.0250.0480.065
090.090.0390.1430.729
100.0760.0170.8940.013
110.1640.1280.660.049
120.2320.2870.0790.403
130.5040.0430.1850.267
140.6710.2080.0560.065
150.0760.7090.0960.119
160.1830.3090.3590.15
PWM
ACGT
01-0.7660.3980.267-0.302
02-2.702-3.0791.349-3.381
03-3.381-1.869-3.2451.328
04-0.888-2.374-3.5391.243
05-0.385-4.3481.165-2.289
06-5.8051.262-4.561-0.786
07-4.7331.091-3.267-0.026
081.238-2.306-1.653-1.347
09-1.019-1.864-0.5591.069
10-1.183-2.6961.273-2.907
11-0.424-0.6710.97-1.632
12-0.0760.137-1.1530.477
130.7-1.746-0.2980.067
140.987-0.185-1.492-1.344
15-1.1881.041-0.959-0.737
16-0.3120.210.361-0.511
Standard thresholds
P-value Threshold
0.001 3.25331
0.0005 4.37091
0.0001 6.69501