RELB.H12RSNP.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	RELB.H12RSNP.0.P.B
Gene (human)	RELB (GeneCards)
Gene synonyms (human)
Gene (mouse)	Relb
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	11
Consensus	GGGRvTTTCCh
GC content	56.09%
Information content (bits; total / per base)	12.401 / 1.127
Data sources	ChIP-Seq
Aligned words	849

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (15)	0.875	0.97	0.853	0.949	0.829	0.942	3.535	4.483	61.377	665.301
Mouse	1 (7)	0.794	0.864	0.704	0.803	0.728	0.793	2.376	2.685	39.0	44.081

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	19.729	3.844	0.425	0.222

TF superclass	Immunoglobulin fold {6} (TFClass)
TF class	Rel homology region (RHR) factors {6.1} (TFClass)
TF family	NFkappaB-related {6.1.1} (TFClass)
TF subfamily	NFkappaB p65-like {6.1.1.2} (TFClass)
TFClass ID	TFClass: 6.1.1.2.2
HGNC	HGNC:9956
MGI	MGI:103289
EntrezGene (human)	GeneID:5971 (SSTAR profile)
EntrezGene (mouse)	GeneID:19698 (SSTAR profile)
UniProt ID (human)	RELB_HUMAN
UniProt ID (mouse)	RELB_MOUSE
UniProt AC (human)	Q01201 (TFClass)
UniProt AC (mouse)	Q04863 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 1 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	RELB.H12RSNP.0.P.B.pcm
PWM	RELB.H12RSNP.0.P.B.pwm
PFM	RELB.H12RSNP.0.P.B.pfm
Alignment	RELB.H12RSNP.0.P.B.words.tsv
Threshold to P-value map	RELB.H12RSNP.0.P.B.thr
Motif in other formats
JASPAR format	RELB.H12RSNP.0.P.B_jaspar_format.txt
MEME format	RELB.H12RSNP.0.P.B_meme_format.meme
Transfac format	RELB.H12RSNP.0.P.B_transfac_format.txt
Homer format	RELB.H12RSNP.0.P.B_homer_format_0.001.txt RELB.H12RSNP.0.P.B_homer_format_0.0005.txt RELB.H12RSNP.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	12.0	10.0	793.0	34.0
02	19.0	3.0	810.0	17.0
03	19.0	7.0	671.0	152.0
04	397.0	19.0	381.0	52.0
05	224.0	320.0	242.0	63.0
06	76.0	3.0	6.0	764.0
07	2.0	20.0	5.0	822.0
08	25.0	150.0	8.0	666.0
09	4.0	788.0	9.0	48.0
10	45.0	726.0	12.0	66.0
11	429.0	131.0	124.0	165.0

PFM

	A	C	G	T
01	0.014	0.012	0.934	0.04
02	0.022	0.004	0.954	0.02
03	0.022	0.008	0.79	0.179
04	0.468	0.022	0.449	0.061
05	0.264	0.377	0.285	0.074
06	0.09	0.004	0.007	0.9
07	0.002	0.024	0.006	0.968
08	0.029	0.177	0.009	0.784
09	0.005	0.928	0.011	0.057
10	0.053	0.855	0.014	0.078
11	0.505	0.154	0.146	0.194

PWM

	A	C	G	T
01	-2.749	-2.907	1.312	-1.791
02	-2.336	-3.821	1.333	-2.438
03	-2.336	-3.204	1.146	-0.331
04	0.622	-2.336	0.582	-1.383
05	0.053	0.408	0.13	-1.196
06	-1.013	-3.821	-3.326	1.275
07	-4.061	-2.289	-3.466	1.348
08	-2.082	-0.344	-3.095	1.138
09	-3.628	1.306	-2.997	-1.46
10	-1.522	1.224	-2.749	-1.151
11	0.7	-0.478	-0.532	-0.25

Standard thresholds

P-value	Threshold
0.001	3.970665
0.0005	5.01493
0.0001	7.157415