| Motif | RELB.H12CORE.0.P.B |
| Gene (human) | RELB (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Relb |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | RELB.H12CORE.0.P.B |
| Gene (human) | RELB (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Relb |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 11 |
| Consensus | GGGRvTTTCCh |
| GC content | 56.09% |
| Information content (bits; total / per base) | 12.401 / 1.127 |
| Data sources | ChIP-Seq |
| Aligned words | 849 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (15) | 0.875 | 0.97 | 0.853 | 0.949 | 0.829 | 0.942 | 3.535 | 4.483 | 61.377 | 665.301 |
| Mouse | 1 (7) | 0.794 | 0.864 | 0.704 | 0.803 | 0.728 | 0.793 | 2.376 | 2.685 | 39.0 | 44.081 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 19.729 | 3.844 | 0.425 | 0.222 |
| TF superclass | Immunoglobulin fold {6} (TFClass) |
| TF class | Rel homology region (RHR) factors {6.1} (TFClass) |
| TF family | NFkappaB-related {6.1.1} (TFClass) |
| TF subfamily | NFkappaB p65-like {6.1.1.2} (TFClass) |
| TFClass ID | TFClass: 6.1.1.2.2 |
| HGNC | HGNC:9956 |
| MGI | MGI:103289 |
| EntrezGene (human) | GeneID:5971 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:19698 (SSTAR profile) |
| UniProt ID (human) | RELB_HUMAN |
| UniProt ID (mouse) | RELB_MOUSE |
| UniProt AC (human) | Q01201 (TFClass) |
| UniProt AC (mouse) | Q04863 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | RELB.H12CORE.0.P.B.pcm |
| PWM | RELB.H12CORE.0.P.B.pwm |
| PFM | RELB.H12CORE.0.P.B.pfm |
| Alignment | RELB.H12CORE.0.P.B.words.tsv |
| Threshold to P-value map | RELB.H12CORE.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | RELB.H12CORE.0.P.B_jaspar_format.txt |
| MEME format | RELB.H12CORE.0.P.B_meme_format.meme |
| Transfac format | RELB.H12CORE.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 12.0 | 10.0 | 793.0 | 34.0 |
| 02 | 19.0 | 3.0 | 810.0 | 17.0 |
| 03 | 19.0 | 7.0 | 671.0 | 152.0 |
| 04 | 397.0 | 19.0 | 381.0 | 52.0 |
| 05 | 224.0 | 320.0 | 242.0 | 63.0 |
| 06 | 76.0 | 3.0 | 6.0 | 764.0 |
| 07 | 2.0 | 20.0 | 5.0 | 822.0 |
| 08 | 25.0 | 150.0 | 8.0 | 666.0 |
| 09 | 4.0 | 788.0 | 9.0 | 48.0 |
| 10 | 45.0 | 726.0 | 12.0 | 66.0 |
| 11 | 429.0 | 131.0 | 124.0 | 165.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.014 | 0.012 | 0.934 | 0.04 |
| 02 | 0.022 | 0.004 | 0.954 | 0.02 |
| 03 | 0.022 | 0.008 | 0.79 | 0.179 |
| 04 | 0.468 | 0.022 | 0.449 | 0.061 |
| 05 | 0.264 | 0.377 | 0.285 | 0.074 |
| 06 | 0.09 | 0.004 | 0.007 | 0.9 |
| 07 | 0.002 | 0.024 | 0.006 | 0.968 |
| 08 | 0.029 | 0.177 | 0.009 | 0.784 |
| 09 | 0.005 | 0.928 | 0.011 | 0.057 |
| 10 | 0.053 | 0.855 | 0.014 | 0.078 |
| 11 | 0.505 | 0.154 | 0.146 | 0.194 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.749 | -2.907 | 1.312 | -1.791 |
| 02 | -2.336 | -3.821 | 1.333 | -2.438 |
| 03 | -2.336 | -3.204 | 1.146 | -0.331 |
| 04 | 0.622 | -2.336 | 0.582 | -1.383 |
| 05 | 0.053 | 0.408 | 0.13 | -1.196 |
| 06 | -1.013 | -3.821 | -3.326 | 1.275 |
| 07 | -4.061 | -2.289 | -3.466 | 1.348 |
| 08 | -2.082 | -0.344 | -3.095 | 1.138 |
| 09 | -3.628 | 1.306 | -2.997 | -1.46 |
| 10 | -1.522 | 1.224 | -2.749 | -1.151 |
| 11 | 0.7 | -0.478 | -0.532 | -0.25 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.970665 |
| 0.0005 | 5.01493 |
| 0.0001 | 7.157415 |