REL.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	REL.H12INVIVO.0.P.B
Gene (human)	REL (GeneCards)
Gene synonyms (human)
Gene (mouse)	Rel
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	15
Consensus	dGGGRRWKKYYWvdd
GC content	53.69%
Information content (bits; total / per base)	11.332 / 0.755
Data sources	ChIP-Seq
Aligned words	355

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	2 (14)	0.806	0.851	0.709	0.783	0.747	0.794	2.715	3.245	39.347	84.081

TF superclass	Immunoglobulin fold {6} (TFClass)
TF class	Rel homology region (RHR) factors {6.1} (TFClass)
TF family	NFkappaB-related {6.1.1} (TFClass)
TF subfamily	NFkappaB p65-like {6.1.1.2} (TFClass)
TFClass ID	TFClass: 6.1.1.2.3
HGNC	HGNC:9954
MGI	MGI:97897
EntrezGene (human)	GeneID:5966 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	REL_HUMAN
UniProt ID (mouse)	REL_MOUSE
UniProt AC (human)	Q04864 (TFClass)
UniProt AC (mouse)	P15307 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	REL.H12INVIVO.0.P.B.pcm
PWM	REL.H12INVIVO.0.P.B.pwm
PFM	REL.H12INVIVO.0.P.B.pfm
Alignment	REL.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	REL.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	REL.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	REL.H12INVIVO.0.P.B_meme_format.meme
Transfac format	REL.H12INVIVO.0.P.B_transfac_format.txt
Homer format	REL.H12INVIVO.0.P.B_homer_format_0.001.txt REL.H12INVIVO.0.P.B_homer_format_0.0005.txt REL.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	168.0	6.0	91.0	90.0
02	16.0	0.0	310.0	29.0
03	7.0	0.0	344.0	4.0
04	6.0	0.0	342.0	7.0
05	181.0	10.0	152.0	12.0
06	266.0	23.0	41.0	25.0
07	195.0	13.0	25.0	122.0
08	28.0	34.0	51.0	242.0
09	6.0	56.0	61.0	232.0
10	30.0	241.0	22.0	62.0
11	14.0	276.0	22.0	43.0
12	210.0	35.0	27.0	83.0
13	64.0	67.0	195.0	29.0
14	98.0	23.0	161.0	73.0
15	75.0	46.0	185.0	49.0

PFM

	A	C	G	T
01	0.473	0.017	0.256	0.254
02	0.045	0.0	0.873	0.082
03	0.02	0.0	0.969	0.011
04	0.017	0.0	0.963	0.02
05	0.51	0.028	0.428	0.034
06	0.749	0.065	0.115	0.07
07	0.549	0.037	0.07	0.344
08	0.079	0.096	0.144	0.682
09	0.017	0.158	0.172	0.654
10	0.085	0.679	0.062	0.175
11	0.039	0.777	0.062	0.121
12	0.592	0.099	0.076	0.234
13	0.18	0.189	0.549	0.082
14	0.276	0.065	0.454	0.206
15	0.211	0.13	0.521	0.138

PWM

	A	C	G	T
01	0.63	-2.492	0.025	0.014
02	-1.642	-4.118	1.239	-1.086
03	-2.366	-4.118	1.343	-2.803
04	-2.492	-4.118	1.337	-2.366
05	0.704	-2.063	0.531	-1.902
06	1.087	-1.305	-0.753	-1.226
07	0.778	-1.83	-1.226	0.314
08	-1.119	-0.934	-0.542	0.993
09	-2.492	-0.451	-0.368	0.951
10	-1.053	0.989	-1.347	-0.352
11	-1.763	1.123	-1.347	-0.707
12	0.852	-0.906	-1.153	-0.066
13	-0.321	-0.276	0.778	-1.086
14	0.098	-1.305	0.588	-0.192
15	-0.165	-0.642	0.726	-0.581

Standard thresholds

P-value	Threshold
0.001	4.49846
0.0005	5.37116
0.0001	7.17121