MotifREL.H12INVITRO.0.P.D
Gene (human)REL
(GeneCards)
Gene synonyms (human)
Gene (mouse)Rel
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length15
ConsensusdGGGRRWKKYYWvdd
GC content53.69%
Information content (bits; total / per base)11.332 / 0.755
Data sourcesChIP-Seq
Aligned words355

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (14) 0.806 0.851 0.709 0.783 0.747 0.794 2.715 3.245 39.347 84.081
TF superclassImmunoglobulin fold {6} (TFClass)
TF classRel homology region (RHR) factors {6.1} (TFClass)
TF familyNFkappaB-related {6.1.1} (TFClass)
TF subfamilyNFkappaB p65-like {6.1.1.2} (TFClass)
TFClass IDTFClass: 6.1.1.2.3
HGNCHGNC:9954
MGIMGI:97897
EntrezGene (human)GeneID:5966
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)REL_HUMAN
UniProt ID (mouse)REL_MOUSE
UniProt AC (human)Q04864
(TFClass)
UniProt AC (mouse)P15307
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01168.06.091.090.0
0216.00.0310.029.0
037.00.0344.04.0
046.00.0342.07.0
05181.010.0152.012.0
06266.023.041.025.0
07195.013.025.0122.0
0828.034.051.0242.0
096.056.061.0232.0
1030.0241.022.062.0
1114.0276.022.043.0
12210.035.027.083.0
1364.067.0195.029.0
1498.023.0161.073.0
1575.046.0185.049.0
PFM
ACGT
010.4730.0170.2560.254
020.0450.00.8730.082
030.020.00.9690.011
040.0170.00.9630.02
050.510.0280.4280.034
060.7490.0650.1150.07
070.5490.0370.070.344
080.0790.0960.1440.682
090.0170.1580.1720.654
100.0850.6790.0620.175
110.0390.7770.0620.121
120.5920.0990.0760.234
130.180.1890.5490.082
140.2760.0650.4540.206
150.2110.130.5210.138
PWM
ACGT
010.63-2.4920.0250.014
02-1.642-4.1181.239-1.086
03-2.366-4.1181.343-2.803
04-2.492-4.1181.337-2.366
050.704-2.0630.531-1.902
061.087-1.305-0.753-1.226
070.778-1.83-1.2260.314
08-1.119-0.934-0.5420.993
09-2.492-0.451-0.3680.951
10-1.0530.989-1.347-0.352
11-1.7631.123-1.347-0.707
120.852-0.906-1.153-0.066
13-0.321-0.2760.778-1.086
140.098-1.3050.588-0.192
15-0.165-0.6420.726-0.581
Standard thresholds
P-value Threshold
0.001 4.49846
0.0005 5.37116
0.0001 7.17121