| Motif | REL.H12INVITRO.0.P.D |
| Gene (human) | REL (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Rel |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | REL.H12INVITRO.0.P.D |
| Gene (human) | REL (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Rel |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 15 |
| Consensus | dGGGRRWKKYYWvdd |
| GC content | 53.69% |
| Information content (bits; total / per base) | 11.332 / 0.755 |
| Data sources | ChIP-Seq |
| Aligned words | 355 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 2 (14) | 0.806 | 0.851 | 0.709 | 0.783 | 0.747 | 0.794 | 2.715 | 3.245 | 39.347 | 84.081 |
| TF superclass | Immunoglobulin fold {6} (TFClass) |
| TF class | Rel homology region (RHR) factors {6.1} (TFClass) |
| TF family | NFkappaB-related {6.1.1} (TFClass) |
| TF subfamily | NFkappaB p65-like {6.1.1.2} (TFClass) |
| TFClass ID | TFClass: 6.1.1.2.3 |
| HGNC | HGNC:9954 |
| MGI | MGI:97897 |
| EntrezGene (human) | GeneID:5966 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | REL_HUMAN |
| UniProt ID (mouse) | REL_MOUSE |
| UniProt AC (human) | Q04864 (TFClass) |
| UniProt AC (mouse) | P15307 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 2 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | REL.H12INVITRO.0.P.D.pcm |
| PWM | REL.H12INVITRO.0.P.D.pwm |
| PFM | REL.H12INVITRO.0.P.D.pfm |
| Alignment | REL.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | REL.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | REL.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | REL.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | REL.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 168.0 | 6.0 | 91.0 | 90.0 |
| 02 | 16.0 | 0.0 | 310.0 | 29.0 |
| 03 | 7.0 | 0.0 | 344.0 | 4.0 |
| 04 | 6.0 | 0.0 | 342.0 | 7.0 |
| 05 | 181.0 | 10.0 | 152.0 | 12.0 |
| 06 | 266.0 | 23.0 | 41.0 | 25.0 |
| 07 | 195.0 | 13.0 | 25.0 | 122.0 |
| 08 | 28.0 | 34.0 | 51.0 | 242.0 |
| 09 | 6.0 | 56.0 | 61.0 | 232.0 |
| 10 | 30.0 | 241.0 | 22.0 | 62.0 |
| 11 | 14.0 | 276.0 | 22.0 | 43.0 |
| 12 | 210.0 | 35.0 | 27.0 | 83.0 |
| 13 | 64.0 | 67.0 | 195.0 | 29.0 |
| 14 | 98.0 | 23.0 | 161.0 | 73.0 |
| 15 | 75.0 | 46.0 | 185.0 | 49.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.473 | 0.017 | 0.256 | 0.254 |
| 02 | 0.045 | 0.0 | 0.873 | 0.082 |
| 03 | 0.02 | 0.0 | 0.969 | 0.011 |
| 04 | 0.017 | 0.0 | 0.963 | 0.02 |
| 05 | 0.51 | 0.028 | 0.428 | 0.034 |
| 06 | 0.749 | 0.065 | 0.115 | 0.07 |
| 07 | 0.549 | 0.037 | 0.07 | 0.344 |
| 08 | 0.079 | 0.096 | 0.144 | 0.682 |
| 09 | 0.017 | 0.158 | 0.172 | 0.654 |
| 10 | 0.085 | 0.679 | 0.062 | 0.175 |
| 11 | 0.039 | 0.777 | 0.062 | 0.121 |
| 12 | 0.592 | 0.099 | 0.076 | 0.234 |
| 13 | 0.18 | 0.189 | 0.549 | 0.082 |
| 14 | 0.276 | 0.065 | 0.454 | 0.206 |
| 15 | 0.211 | 0.13 | 0.521 | 0.138 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.63 | -2.492 | 0.025 | 0.014 |
| 02 | -1.642 | -4.118 | 1.239 | -1.086 |
| 03 | -2.366 | -4.118 | 1.343 | -2.803 |
| 04 | -2.492 | -4.118 | 1.337 | -2.366 |
| 05 | 0.704 | -2.063 | 0.531 | -1.902 |
| 06 | 1.087 | -1.305 | -0.753 | -1.226 |
| 07 | 0.778 | -1.83 | -1.226 | 0.314 |
| 08 | -1.119 | -0.934 | -0.542 | 0.993 |
| 09 | -2.492 | -0.451 | -0.368 | 0.951 |
| 10 | -1.053 | 0.989 | -1.347 | -0.352 |
| 11 | -1.763 | 1.123 | -1.347 | -0.707 |
| 12 | 0.852 | -0.906 | -1.153 | -0.066 |
| 13 | -0.321 | -0.276 | 0.778 | -1.086 |
| 14 | 0.098 | -1.305 | 0.588 | -0.192 |
| 15 | -0.165 | -0.642 | 0.726 | -0.581 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.49846 |
| 0.0005 | 5.37116 |
| 0.0001 | 7.17121 |