RBAK.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	RBAK.H12INVIVO.0.P.C
Gene (human)	RBAK (GeneCards)
Gene synonyms (human)	ZNF769
Gene (mouse)	Rbak
Gene synonyms (mouse)	Znf769
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	16
Consensus	vRdRASRARhRdbMCh
GC content	55.72%
Information content (bits; total / per base)	11.046 / 0.69
Data sources	ChIP-Seq
Aligned words	504

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.829	0.843	0.745	0.753	0.816	0.828	2.98	3.062	120.741	141.921

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF12-like {2.3.3.81} (TFClass)
TFClass ID	TFClass: 2.3.3.81.2
HGNC	HGNC:17680
MGI	MGI:1927369
EntrezGene (human)	GeneID:57786 (SSTAR profile)
EntrezGene (mouse)	GeneID:57782 (SSTAR profile)
UniProt ID (human)	RBAK_HUMAN
UniProt ID (mouse)	RBAK_MOUSE
UniProt AC (human)	Q9NYW8 (TFClass)
UniProt AC (mouse)	Q8BQC8 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	RBAK.H12INVIVO.0.P.C.pcm
PWM	RBAK.H12INVIVO.0.P.C.pwm
PFM	RBAK.H12INVIVO.0.P.C.pfm
Alignment	RBAK.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	RBAK.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	RBAK.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	RBAK.H12INVIVO.0.P.C_meme_format.meme
Transfac format	RBAK.H12INVIVO.0.P.C_transfac_format.txt
Homer format	RBAK.H12INVIVO.0.P.C_homer_format_0.001.txt RBAK.H12INVIVO.0.P.C_homer_format_0.0005.txt RBAK.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	98.0	128.0	217.0	61.0
02	85.0	41.0	357.0	21.0
03	251.0	36.0	69.0	148.0
04	206.0	4.0	290.0	4.0
05	497.0	0.0	3.0	4.0
06	12.0	233.0	249.0	10.0
07	269.0	7.0	225.0	3.0
08	443.0	19.0	19.0	23.0
09	291.0	18.0	195.0	0.0
10	106.0	244.0	68.0	86.0
11	283.0	30.0	166.0	25.0
12	133.0	66.0	214.0	91.0
13	45.0	189.0	216.0	54.0
14	75.0	311.0	47.0	71.0
15	10.0	454.0	20.0	20.0
16	69.0	291.0	67.0	77.0

PFM

	A	C	G	T
01	0.194	0.254	0.431	0.121
02	0.169	0.081	0.708	0.042
03	0.498	0.071	0.137	0.294
04	0.409	0.008	0.575	0.008
05	0.986	0.0	0.006	0.008
06	0.024	0.462	0.494	0.02
07	0.534	0.014	0.446	0.006
08	0.879	0.038	0.038	0.046
09	0.577	0.036	0.387	0.0
10	0.21	0.484	0.135	0.171
11	0.562	0.06	0.329	0.05
12	0.264	0.131	0.425	0.181
13	0.089	0.375	0.429	0.107
14	0.149	0.617	0.093	0.141
15	0.02	0.901	0.04	0.04
16	0.137	0.577	0.133	0.153

PWM

	A	C	G	T
01	-0.248	0.016	0.538	-0.712
02	-0.388	-1.098	1.034	-1.733
03	0.683	-1.223	-0.592	0.159
04	0.487	-3.134	0.827	-3.134
05	1.363	-4.407	-3.332	-3.134
06	-2.242	0.609	0.675	-2.401
07	0.752	-2.702	0.574	-3.332
08	1.249	-1.825	-1.825	-1.648
09	0.83	-1.875	0.432	-4.407
10	-0.171	0.655	-0.606	-0.376
11	0.802	-1.397	0.273	-1.569
12	0.053	-0.636	0.525	-0.321
13	-1.008	0.401	0.534	-0.831
14	-0.511	0.896	-0.966	-0.564
15	-2.401	1.273	-1.778	-1.778
16	-0.592	0.83	-0.621	-0.485

Standard thresholds

P-value	Threshold
0.001	4.54006
0.0005	5.43216
0.0001	7.25246