| Motif | RAX2.H12INVIVO.0.S.D |
| Gene (human) | RAX2 (GeneCards) |
| Gene synonyms (human) | QRX, RAXL1 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | RAX2.H12INVIVO.0.S.D |
| Gene (human) | RAX2 (GeneCards) |
| Gene synonyms (human) | QRX, RAXL1 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 14 |
| Consensus | dRdYYAATTARbnn |
| GC content | 29.5% |
| Information content (bits; total / per base) | 12.861 / 0.919 |
| Data sources | HT-SELEX |
| Aligned words | 9658 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.968 | 0.949 | 0.939 | 0.915 | 0.854 | 0.841 |
| best | 0.984 | 0.973 | 0.971 | 0.955 | 0.924 | 0.907 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | Paired-related HD {3.1.3} (TFClass) |
| TF subfamily | RAX {3.1.3.22} (TFClass) |
| TFClass ID | TFClass: 3.1.3.22.2 |
| HGNC | HGNC:18286 |
| MGI | |
| EntrezGene (human) | GeneID:84839 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | RAX2_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q96IS3 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | RAX2.H12INVIVO.0.S.D.pcm |
| PWM | RAX2.H12INVIVO.0.S.D.pwm |
| PFM | RAX2.H12INVIVO.0.S.D.pfm |
| Alignment | RAX2.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | RAX2.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | RAX2.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | RAX2.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | RAX2.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3711.5 | 1613.5 | 1695.5 | 2637.5 |
| 02 | 6697.5 | 687.5 | 1460.5 | 812.5 |
| 03 | 3560.0 | 1345.0 | 1968.0 | 2785.0 |
| 04 | 216.0 | 3465.0 | 1300.0 | 4677.0 |
| 05 | 169.0 | 2454.0 | 111.0 | 6924.0 |
| 06 | 9238.0 | 71.0 | 347.0 | 2.0 |
| 07 | 9650.0 | 2.0 | 6.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 9658.0 |
| 09 | 0.0 | 0.0 | 1.0 | 9657.0 |
| 10 | 9656.0 | 0.0 | 2.0 | 0.0 |
| 11 | 2256.0 | 945.0 | 6181.0 | 276.0 |
| 12 | 662.0 | 3583.0 | 1937.0 | 3476.0 |
| 13 | 1391.75 | 2343.75 | 3630.75 | 2291.75 |
| 14 | 2338.25 | 2365.25 | 2367.25 | 2587.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.384 | 0.167 | 0.176 | 0.273 |
| 02 | 0.693 | 0.071 | 0.151 | 0.084 |
| 03 | 0.369 | 0.139 | 0.204 | 0.288 |
| 04 | 0.022 | 0.359 | 0.135 | 0.484 |
| 05 | 0.017 | 0.254 | 0.011 | 0.717 |
| 06 | 0.957 | 0.007 | 0.036 | 0.0 |
| 07 | 0.999 | 0.0 | 0.001 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 1.0 |
| 09 | 0.0 | 0.0 | 0.0 | 1.0 |
| 10 | 1.0 | 0.0 | 0.0 | 0.0 |
| 11 | 0.234 | 0.098 | 0.64 | 0.029 |
| 12 | 0.069 | 0.371 | 0.201 | 0.36 |
| 13 | 0.144 | 0.243 | 0.376 | 0.237 |
| 14 | 0.242 | 0.245 | 0.245 | 0.268 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.43 | -0.403 | -0.353 | 0.088 |
| 02 | 1.02 | -1.254 | -0.502 | -1.087 |
| 03 | 0.388 | -0.584 | -0.204 | 0.143 |
| 04 | -2.404 | 0.361 | -0.618 | 0.661 |
| 05 | -2.647 | 0.016 | -3.06 | 1.053 |
| 06 | 1.341 | -3.496 | -1.934 | -6.333 |
| 07 | 1.385 | -6.333 | -5.675 | -6.96 |
| 08 | -6.96 | -6.96 | -6.96 | 1.386 |
| 09 | -6.96 | -6.96 | -6.598 | 1.385 |
| 10 | 1.385 | -6.96 | -6.333 | -6.96 |
| 11 | -0.068 | -0.937 | 0.939 | -2.162 |
| 12 | -1.291 | 0.394 | -0.22 | 0.364 |
| 13 | -0.55 | -0.03 | 0.408 | -0.052 |
| 14 | -0.032 | -0.021 | -0.02 | 0.069 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.66976 |
| 0.0005 | 4.45676 |
| 0.0001 | 7.42061 |