MotifRAX2.H12INVITRO.0.S.B
Gene (human)RAX2
(GeneCards)
Gene synonyms (human)QRX, RAXL1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length14
ConsensusdRdYYAATTARbnn
GC content29.5%
Information content (bits; total / per base)12.861 / 0.919
Data sourcesHT-SELEX
Aligned words9658

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.968 0.949 0.939 0.915 0.854 0.841
best 0.984 0.973 0.971 0.955 0.924 0.907
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyRAX {3.1.3.22} (TFClass)
TFClass IDTFClass: 3.1.3.22.2
HGNCHGNC:18286
MGI
EntrezGene (human)GeneID:84839
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)RAX2_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q96IS3
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
013711.51613.51695.52637.5
026697.5687.51460.5812.5
033560.01345.01968.02785.0
04216.03465.01300.04677.0
05169.02454.0111.06924.0
069238.071.0347.02.0
079650.02.06.00.0
080.00.00.09658.0
090.00.01.09657.0
109656.00.02.00.0
112256.0945.06181.0276.0
12662.03583.01937.03476.0
131391.752343.753630.752291.75
142338.252365.252367.252587.25
PFM
ACGT
010.3840.1670.1760.273
020.6930.0710.1510.084
030.3690.1390.2040.288
040.0220.3590.1350.484
050.0170.2540.0110.717
060.9570.0070.0360.0
070.9990.00.0010.0
080.00.00.01.0
090.00.00.01.0
101.00.00.00.0
110.2340.0980.640.029
120.0690.3710.2010.36
130.1440.2430.3760.237
140.2420.2450.2450.268
PWM
ACGT
010.43-0.403-0.3530.088
021.02-1.254-0.502-1.087
030.388-0.584-0.2040.143
04-2.4040.361-0.6180.661
05-2.6470.016-3.061.053
061.341-3.496-1.934-6.333
071.385-6.333-5.675-6.96
08-6.96-6.96-6.961.386
09-6.96-6.96-6.5981.385
101.385-6.96-6.333-6.96
11-0.068-0.9370.939-2.162
12-1.2910.394-0.220.364
13-0.55-0.030.408-0.052
14-0.032-0.021-0.020.069
Standard thresholds
P-value Threshold
0.001 2.66976
0.0005 4.45676
0.0001 7.42061