Motif | RAX2.H12CORE.0.S.B |
Gene (human) | RAX2 (GeneCards) |
Gene synonyms (human) | QRX, RAXL1 |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | RAX2.H12CORE.0.S.B |
Gene (human) | RAX2 (GeneCards) |
Gene synonyms (human) | QRX, RAXL1 |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 14 |
Consensus | dRdYYAATTARbnn |
GC content | 29.5% |
Information content (bits; total / per base) | 12.861 / 0.919 |
Data sources | HT-SELEX |
Aligned words | 9658 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 2 experiments | median | 0.968 | 0.949 | 0.939 | 0.915 | 0.854 | 0.841 |
best | 0.984 | 0.973 | 0.971 | 0.955 | 0.924 | 0.907 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | Paired-related HD {3.1.3} (TFClass) |
TF subfamily | RAX {3.1.3.22} (TFClass) |
TFClass ID | TFClass: 3.1.3.22.2 |
HGNC | HGNC:18286 |
MGI | |
EntrezGene (human) | GeneID:84839 (SSTAR profile) |
EntrezGene (mouse) | |
UniProt ID (human) | RAX2_HUMAN |
UniProt ID (mouse) | |
UniProt AC (human) | Q96IS3 (TFClass) |
UniProt AC (mouse) | |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 0 |
PCM | RAX2.H12CORE.0.S.B.pcm |
PWM | RAX2.H12CORE.0.S.B.pwm |
PFM | RAX2.H12CORE.0.S.B.pfm |
Alignment | RAX2.H12CORE.0.S.B.words.tsv |
Threshold to P-value map | RAX2.H12CORE.0.S.B.thr |
Motif in other formats | |
JASPAR format | RAX2.H12CORE.0.S.B_jaspar_format.txt |
MEME format | RAX2.H12CORE.0.S.B_meme_format.meme |
Transfac format | RAX2.H12CORE.0.S.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 3711.5 | 1613.5 | 1695.5 | 2637.5 |
02 | 6697.5 | 687.5 | 1460.5 | 812.5 |
03 | 3560.0 | 1345.0 | 1968.0 | 2785.0 |
04 | 216.0 | 3465.0 | 1300.0 | 4677.0 |
05 | 169.0 | 2454.0 | 111.0 | 6924.0 |
06 | 9238.0 | 71.0 | 347.0 | 2.0 |
07 | 9650.0 | 2.0 | 6.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 9658.0 |
09 | 0.0 | 0.0 | 1.0 | 9657.0 |
10 | 9656.0 | 0.0 | 2.0 | 0.0 |
11 | 2256.0 | 945.0 | 6181.0 | 276.0 |
12 | 662.0 | 3583.0 | 1937.0 | 3476.0 |
13 | 1391.75 | 2343.75 | 3630.75 | 2291.75 |
14 | 2338.25 | 2365.25 | 2367.25 | 2587.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.384 | 0.167 | 0.176 | 0.273 |
02 | 0.693 | 0.071 | 0.151 | 0.084 |
03 | 0.369 | 0.139 | 0.204 | 0.288 |
04 | 0.022 | 0.359 | 0.135 | 0.484 |
05 | 0.017 | 0.254 | 0.011 | 0.717 |
06 | 0.957 | 0.007 | 0.036 | 0.0 |
07 | 0.999 | 0.0 | 0.001 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.0 | 0.0 | 0.0 | 1.0 |
10 | 1.0 | 0.0 | 0.0 | 0.0 |
11 | 0.234 | 0.098 | 0.64 | 0.029 |
12 | 0.069 | 0.371 | 0.201 | 0.36 |
13 | 0.144 | 0.243 | 0.376 | 0.237 |
14 | 0.242 | 0.245 | 0.245 | 0.268 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.43 | -0.403 | -0.353 | 0.088 |
02 | 1.02 | -1.254 | -0.502 | -1.087 |
03 | 0.388 | -0.584 | -0.204 | 0.143 |
04 | -2.404 | 0.361 | -0.618 | 0.661 |
05 | -2.647 | 0.016 | -3.06 | 1.053 |
06 | 1.341 | -3.496 | -1.934 | -6.333 |
07 | 1.385 | -6.333 | -5.675 | -6.96 |
08 | -6.96 | -6.96 | -6.96 | 1.386 |
09 | -6.96 | -6.96 | -6.598 | 1.385 |
10 | 1.385 | -6.96 | -6.333 | -6.96 |
11 | -0.068 | -0.937 | 0.939 | -2.162 |
12 | -1.291 | 0.394 | -0.22 | 0.364 |
13 | -0.55 | -0.03 | 0.408 | -0.052 |
14 | -0.032 | -0.021 | -0.02 | 0.069 |
P-value | Threshold |
---|---|
0.001 | 2.66976 |
0.0005 | 4.45676 |
0.0001 | 7.42061 |