MotifRARB.H12INVITRO.0.SM.B
Gene (human)RARB
(GeneCards)
Gene synonyms (human)HAP, NR1B2
Gene (mouse)Rarb
Gene synonyms (mouse)Nr1b2
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length10
ConsensusdRAGGTCAhb
GC content50.79%
Information content (bits; total / per base)10.7 / 1.07
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9967

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (14) 0.636 0.661 0.458 0.508 0.581 0.615 1.364 1.554 16.393 32.602

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.863 0.842 0.728 0.724 0.623 0.638
best 0.936 0.915 0.804 0.793 0.668 0.684
Methyl HT-SELEX, 1 experiments median 0.936 0.915 0.804 0.793 0.668 0.684
best 0.936 0.915 0.804 0.793 0.668 0.684
Non-Methyl HT-SELEX, 1 experiments median 0.79 0.768 0.652 0.654 0.577 0.592
best 0.79 0.768 0.652 0.654 0.577 0.592
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familyThyroid hormone receptor-related {2.1.2} (TFClass)
TF subfamilyRAR (NR1B) {2.1.2.1} (TFClass)
TFClass IDTFClass: 2.1.2.1.2
HGNCHGNC:9865
MGIMGI:97857
EntrezGene (human)GeneID:5915
(SSTAR profile)
EntrezGene (mouse)GeneID:218772
(SSTAR profile)
UniProt ID (human)RARB_HUMAN
UniProt ID (mouse)RARB_MOUSE
UniProt AC (human)P10826
(TFClass)
UniProt AC (mouse)P22605
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 2 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
014003.51761.51914.52287.5
025588.75563.752933.75880.75
038431.0119.01290.0127.0
040.07.09945.015.0
051.00.09689.0277.0
065.04.069.09889.0
0751.09668.0168.080.0
088118.092.01685.072.0
092580.03458.01114.02815.0
101913.751972.754164.751915.75
PFM
ACGT
010.4020.1770.1920.23
020.5610.0570.2940.088
030.8460.0120.1290.013
040.00.0010.9980.002
050.00.00.9720.028
060.0010.00.0070.992
070.0050.970.0170.008
080.8140.0090.1690.007
090.2590.3470.1120.282
100.1920.1980.4180.192
PWM
ACGT
010.474-0.346-0.263-0.085
020.807-1.4830.163-1.038
031.218-3.023-0.657-2.96
04-6.988-5.5911.383-4.971
05-6.627-6.9881.357-2.189
06-5.834-5.981-3.5551.378
07-3.8461.355-2.684-3.411
081.18-3.275-0.391-3.514
090.0350.327-0.8040.122
10-0.264-0.2330.513-0.263
Standard thresholds
P-value Threshold
0.001 4.344235
0.0005 5.590775
0.0001 7.682985