MotifPRRX1.H12INVIVO.1.S.D
Gene (human)PRRX1
(GeneCards)
Gene synonyms (human)PMX1
Gene (mouse)Prrx1
Gene synonyms (mouse)Pmx, Pmx1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length17
ConsensusnvYTAATTARhYhAdWd
GC content27.04%
Information content (bits; total / per base)15.863 / 0.933
Data sourcesHT-SELEX
Aligned words5328

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 4 experiments median 0.965 0.947 0.893 0.876 0.744 0.756
best 0.995 0.992 0.989 0.983 0.974 0.964
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyPRRX {3.1.3.21} (TFClass)
TFClass IDTFClass: 3.1.3.21.1
HGNCHGNC:9142
MGIMGI:97712
EntrezGene (human)GeneID:5396
(SSTAR profile)
EntrezGene (mouse)GeneID:18933
(SSTAR profile)
UniProt ID (human)PRRX1_HUMAN
UniProt ID (mouse)PRRX1_MOUSE
UniProt AC (human)P54821
(TFClass)
UniProt AC (mouse)P63013
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 0
PCM
ACGT
011008.251964.251465.25890.25
021240.751682.751944.75459.75
03109.03087.0881.01251.0
040.077.00.05251.0
055328.00.00.00.0
065328.00.00.00.0
070.00.00.05328.0
080.00.00.05328.0
094022.00.01306.00.0
101228.0224.03875.01.0
112012.01181.0583.01552.0
12417.0761.0448.03702.0
132254.0461.0363.02250.0
144313.0192.0145.0678.0
151638.0380.0760.02550.0
161055.25634.25468.253170.25
172034.5556.51048.51688.5
PFM
ACGT
010.1890.3690.2750.167
020.2330.3160.3650.086
030.020.5790.1650.235
040.00.0140.00.986
051.00.00.00.0
061.00.00.00.0
070.00.00.01.0
080.00.00.01.0
090.7550.00.2450.0
100.230.0420.7270.0
110.3780.2220.1090.291
120.0780.1430.0840.695
130.4230.0870.0680.422
140.8090.0360.0270.127
150.3070.0710.1430.479
160.1980.1190.0880.595
170.3820.1040.1970.317
PWM
ACGT
01-0.2780.3880.095-0.402
02-0.0710.2330.378-1.061
03-2.4850.84-0.413-0.063
04-6.433-2.825-6.4331.371
051.385-6.433-6.433-6.433
061.385-6.433-6.433-6.433
07-6.433-6.433-6.4331.385
08-6.433-6.433-6.4331.385
091.104-6.433-0.02-6.433
10-0.081-1.7751.067-6.05
110.412-0.12-0.8240.153
12-1.158-0.559-1.0861.021
130.525-1.058-1.2960.524
141.174-1.927-2.205-0.674
150.206-1.25-0.560.649
16-0.232-0.74-1.0420.866
170.423-0.871-0.2390.237
Standard thresholds
P-value Threshold
0.001 0.31816
0.0005 2.04246
0.0001 6.01076