MotifPRRX1.H12INVIVO.0.S.D
Gene (human)PRRX1
(GeneCards)
Gene synonyms (human)PMX1
Gene (mouse)Prrx1
Gene synonyms (mouse)Pmx, Pmx1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnvhTAATTRvnbn
GC content30.39%
Information content (bits; total / per base)11.393 / 0.876
Data sourcesHT-SELEX
Aligned words9613

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 4 experiments median 0.967 0.948 0.912 0.89 0.766 0.773
best 0.991 0.985 0.985 0.976 0.972 0.959
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyPRRX {3.1.3.21} (TFClass)
TFClass IDTFClass: 3.1.3.21.1
HGNCHGNC:9142
MGIMGI:97712
EntrezGene (human)GeneID:5396
(SSTAR profile)
EntrezGene (mouse)GeneID:18933
(SSTAR profile)
UniProt ID (human)PRRX1_HUMAN
UniProt ID (mouse)PRRX1_MOUSE
UniProt AC (human)P54821
(TFClass)
UniProt AC (mouse)P63013
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 0
PCM
ACGT
012407.753052.752185.751966.75
022583.02674.03300.01056.0
031430.04879.0862.02442.0
043.036.00.09574.0
059611.00.02.00.0
069613.00.00.00.0
070.02.00.09611.0
084.0379.045.09185.0
095846.0314.03122.0331.0
103740.02197.03443.0233.0
113238.02291.01742.02342.0
121279.01970.01628.04736.0
132180.752058.751799.753573.75
PFM
ACGT
010.250.3180.2270.205
020.2690.2780.3430.11
030.1490.5080.090.254
040.00.0040.00.996
051.00.00.00.0
061.00.00.00.0
070.00.00.01.0
080.00.0390.0050.955
090.6080.0330.3250.034
100.3890.2290.3580.024
110.3370.2380.1810.244
120.1330.2050.1690.493
130.2270.2140.1870.372
PWM
ACGT
010.0020.239-0.095-0.2
020.0720.1070.317-0.821
03-0.5180.708-1.0240.016
04-6.119-4.14-6.9561.382
051.385-6.956-6.329-6.956
061.386-6.956-6.956-6.956
07-6.956-6.329-6.9561.385
08-5.946-1.842-3.9291.34
090.888-2.0290.261-1.977
100.442-0.090.359-2.325
110.298-0.048-0.321-0.026
12-0.63-0.199-0.3890.678
13-0.097-0.155-0.2890.396
Standard thresholds
P-value Threshold
0.001 3.785315
0.0005 5.39497
0.0001 7.857215