| Motif | PRRX1.H12INVIVO.0.S.D |
| Gene (human) | PRRX1 (GeneCards) |
| Gene synonyms (human) | PMX1 |
| Gene (mouse) | Prrx1 |
| Gene synonyms (mouse) | Pmx, Pmx1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | PRRX1.H12INVIVO.0.S.D |
| Gene (human) | PRRX1 (GeneCards) |
| Gene synonyms (human) | PMX1 |
| Gene (mouse) | Prrx1 |
| Gene synonyms (mouse) | Pmx, Pmx1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 13 |
| Consensus | nvhTAATTRvnbn |
| GC content | 30.39% |
| Information content (bits; total / per base) | 11.393 / 0.876 |
| Data sources | HT-SELEX |
| Aligned words | 9613 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 4 experiments | median | 0.967 | 0.948 | 0.912 | 0.89 | 0.766 | 0.773 |
| best | 0.991 | 0.985 | 0.985 | 0.976 | 0.972 | 0.959 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | Paired-related HD {3.1.3} (TFClass) |
| TF subfamily | PRRX {3.1.3.21} (TFClass) |
| TFClass ID | TFClass: 3.1.3.21.1 |
| HGNC | HGNC:9142 |
| MGI | MGI:97712 |
| EntrezGene (human) | GeneID:5396 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18933 (SSTAR profile) |
| UniProt ID (human) | PRRX1_HUMAN |
| UniProt ID (mouse) | PRRX1_MOUSE |
| UniProt AC (human) | P54821 (TFClass) |
| UniProt AC (mouse) | P63013 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 0 |
| PCM | PRRX1.H12INVIVO.0.S.D.pcm |
| PWM | PRRX1.H12INVIVO.0.S.D.pwm |
| PFM | PRRX1.H12INVIVO.0.S.D.pfm |
| Alignment | PRRX1.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | PRRX1.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | PRRX1.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | PRRX1.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | PRRX1.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2407.75 | 3052.75 | 2185.75 | 1966.75 |
| 02 | 2583.0 | 2674.0 | 3300.0 | 1056.0 |
| 03 | 1430.0 | 4879.0 | 862.0 | 2442.0 |
| 04 | 3.0 | 36.0 | 0.0 | 9574.0 |
| 05 | 9611.0 | 0.0 | 2.0 | 0.0 |
| 06 | 9613.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 2.0 | 0.0 | 9611.0 |
| 08 | 4.0 | 379.0 | 45.0 | 9185.0 |
| 09 | 5846.0 | 314.0 | 3122.0 | 331.0 |
| 10 | 3740.0 | 2197.0 | 3443.0 | 233.0 |
| 11 | 3238.0 | 2291.0 | 1742.0 | 2342.0 |
| 12 | 1279.0 | 1970.0 | 1628.0 | 4736.0 |
| 13 | 2180.75 | 2058.75 | 1799.75 | 3573.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.25 | 0.318 | 0.227 | 0.205 |
| 02 | 0.269 | 0.278 | 0.343 | 0.11 |
| 03 | 0.149 | 0.508 | 0.09 | 0.254 |
| 04 | 0.0 | 0.004 | 0.0 | 0.996 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.0 | 0.039 | 0.005 | 0.955 |
| 09 | 0.608 | 0.033 | 0.325 | 0.034 |
| 10 | 0.389 | 0.229 | 0.358 | 0.024 |
| 11 | 0.337 | 0.238 | 0.181 | 0.244 |
| 12 | 0.133 | 0.205 | 0.169 | 0.493 |
| 13 | 0.227 | 0.214 | 0.187 | 0.372 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.002 | 0.239 | -0.095 | -0.2 |
| 02 | 0.072 | 0.107 | 0.317 | -0.821 |
| 03 | -0.518 | 0.708 | -1.024 | 0.016 |
| 04 | -6.119 | -4.14 | -6.956 | 1.382 |
| 05 | 1.385 | -6.956 | -6.329 | -6.956 |
| 06 | 1.386 | -6.956 | -6.956 | -6.956 |
| 07 | -6.956 | -6.329 | -6.956 | 1.385 |
| 08 | -5.946 | -1.842 | -3.929 | 1.34 |
| 09 | 0.888 | -2.029 | 0.261 | -1.977 |
| 10 | 0.442 | -0.09 | 0.359 | -2.325 |
| 11 | 0.298 | -0.048 | -0.321 | -0.026 |
| 12 | -0.63 | -0.199 | -0.389 | 0.678 |
| 13 | -0.097 | -0.155 | -0.289 | 0.396 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.785315 |
| 0.0005 | 5.39497 |
| 0.0001 | 7.857215 |