Motif | PRRX1.H12CORE.1.S.B |
Gene (human) | PRRX1 (GeneCards) |
Gene synonyms (human) | PMX1 |
Gene (mouse) | Prrx1 |
Gene synonyms (mouse) | Pmx, Pmx1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | PRRX1.H12CORE.1.S.B |
Gene (human) | PRRX1 (GeneCards) |
Gene synonyms (human) | PMX1 |
Gene (mouse) | Prrx1 |
Gene synonyms (mouse) | Pmx, Pmx1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 17 |
Consensus | nvYTAATTARhYhAdWd |
GC content | 27.04% |
Information content (bits; total / per base) | 15.863 / 0.933 |
Data sources | HT-SELEX |
Aligned words | 5328 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 4 experiments | median | 0.965 | 0.947 | 0.893 | 0.876 | 0.744 | 0.756 |
best | 0.995 | 0.992 | 0.989 | 0.983 | 0.974 | 0.964 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | Paired-related HD {3.1.3} (TFClass) |
TF subfamily | PRRX {3.1.3.21} (TFClass) |
TFClass ID | TFClass: 3.1.3.21.1 |
HGNC | HGNC:9142 |
MGI | MGI:97712 |
EntrezGene (human) | GeneID:5396 (SSTAR profile) |
EntrezGene (mouse) | GeneID:18933 (SSTAR profile) |
UniProt ID (human) | PRRX1_HUMAN |
UniProt ID (mouse) | PRRX1_MOUSE |
UniProt AC (human) | P54821 (TFClass) |
UniProt AC (mouse) | P63013 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 4 |
Methyl-HT-SELEX | 0 |
PCM | PRRX1.H12CORE.1.S.B.pcm |
PWM | PRRX1.H12CORE.1.S.B.pwm |
PFM | PRRX1.H12CORE.1.S.B.pfm |
Alignment | PRRX1.H12CORE.1.S.B.words.tsv |
Threshold to P-value map | PRRX1.H12CORE.1.S.B.thr |
Motif in other formats | |
JASPAR format | PRRX1.H12CORE.1.S.B_jaspar_format.txt |
MEME format | PRRX1.H12CORE.1.S.B_meme_format.meme |
Transfac format | PRRX1.H12CORE.1.S.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1008.25 | 1964.25 | 1465.25 | 890.25 |
02 | 1240.75 | 1682.75 | 1944.75 | 459.75 |
03 | 109.0 | 3087.0 | 881.0 | 1251.0 |
04 | 0.0 | 77.0 | 0.0 | 5251.0 |
05 | 5328.0 | 0.0 | 0.0 | 0.0 |
06 | 5328.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.0 | 0.0 | 5328.0 |
08 | 0.0 | 0.0 | 0.0 | 5328.0 |
09 | 4022.0 | 0.0 | 1306.0 | 0.0 |
10 | 1228.0 | 224.0 | 3875.0 | 1.0 |
11 | 2012.0 | 1181.0 | 583.0 | 1552.0 |
12 | 417.0 | 761.0 | 448.0 | 3702.0 |
13 | 2254.0 | 461.0 | 363.0 | 2250.0 |
14 | 4313.0 | 192.0 | 145.0 | 678.0 |
15 | 1638.0 | 380.0 | 760.0 | 2550.0 |
16 | 1055.25 | 634.25 | 468.25 | 3170.25 |
17 | 2034.5 | 556.5 | 1048.5 | 1688.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.189 | 0.369 | 0.275 | 0.167 |
02 | 0.233 | 0.316 | 0.365 | 0.086 |
03 | 0.02 | 0.579 | 0.165 | 0.235 |
04 | 0.0 | 0.014 | 0.0 | 0.986 |
05 | 1.0 | 0.0 | 0.0 | 0.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.0 | 0.0 | 1.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.755 | 0.0 | 0.245 | 0.0 |
10 | 0.23 | 0.042 | 0.727 | 0.0 |
11 | 0.378 | 0.222 | 0.109 | 0.291 |
12 | 0.078 | 0.143 | 0.084 | 0.695 |
13 | 0.423 | 0.087 | 0.068 | 0.422 |
14 | 0.809 | 0.036 | 0.027 | 0.127 |
15 | 0.307 | 0.071 | 0.143 | 0.479 |
16 | 0.198 | 0.119 | 0.088 | 0.595 |
17 | 0.382 | 0.104 | 0.197 | 0.317 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.278 | 0.388 | 0.095 | -0.402 |
02 | -0.071 | 0.233 | 0.378 | -1.061 |
03 | -2.485 | 0.84 | -0.413 | -0.063 |
04 | -6.433 | -2.825 | -6.433 | 1.371 |
05 | 1.385 | -6.433 | -6.433 | -6.433 |
06 | 1.385 | -6.433 | -6.433 | -6.433 |
07 | -6.433 | -6.433 | -6.433 | 1.385 |
08 | -6.433 | -6.433 | -6.433 | 1.385 |
09 | 1.104 | -6.433 | -0.02 | -6.433 |
10 | -0.081 | -1.775 | 1.067 | -6.05 |
11 | 0.412 | -0.12 | -0.824 | 0.153 |
12 | -1.158 | -0.559 | -1.086 | 1.021 |
13 | 0.525 | -1.058 | -1.296 | 0.524 |
14 | 1.174 | -1.927 | -2.205 | -0.674 |
15 | 0.206 | -1.25 | -0.56 | 0.649 |
16 | -0.232 | -0.74 | -1.042 | 0.866 |
17 | 0.423 | -0.871 | -0.239 | 0.237 |
P-value | Threshold |
---|---|
0.001 | 0.31816 |
0.0005 | 2.04246 |
0.0001 | 6.01076 |